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Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades.

Guyot R, Lefebvre-Pautigny F, Tranchant-Dubreuil C, Rigoreau M, Hamon P, Leroy T, Hamon S, Poncet V, Crouzillat D, de Kochko A.

BMC Genomics. 2012 Mar 20;13:103. doi: 10.1186/1471-2164-13-103.


Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genome.

Cenci A, Combes MC, Lashermes P.

Mol Genet Genomics. 2010 May;283(5):493-501. doi: 10.1007/s00438-010-0534-7. Epub 2010 Apr 2.


Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes.

Guyot R, de la Mare M, Viader V, Hamon P, Coriton O, Bustamante-Porras J, Poncet V, Campa C, Hamon S, de Kochko A.

BMC Plant Biol. 2009 Feb 25;9:22. doi: 10.1186/1471-2229-9-22.


Differences in evolution rates among eudicotyledon species observed by analysis of protein divergence.

Cenci A, Combes MC, Lashermes P.

J Hered. 2013 Jul-Aug;104(4):459-64. doi: 10.1093/jhered/est025. Epub 2013 Apr 17.


A COSII genetic map of the pepper genome provides a detailed picture of synteny with tomato and new insights into recent chromosome evolution in the genus Capsicum.

Wu F, Eannetta NT, Xu Y, Durrett R, Mazourek M, Jahn MM, Tanksley SD.

Theor Appl Genet. 2009 May;118(7):1279-93. doi: 10.1007/s00122-009-0980-y. Epub 2009 Feb 20.


BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution.

Dereeper A, Guyot R, Tranchant-Dubreuil C, Anthony F, Argout X, de Bellis F, Combes MC, Gavory F, de Kochko A, Kudrna D, Leroy T, Poulain J, Rondeau M, Song X, Wing R, Lashermes P.

Plant Mol Biol. 2013 Oct;83(3):177-89. doi: 10.1007/s11103-013-0077-5. Epub 2013 May 25.


A detailed synteny map of the eggplant genome based on conserved ortholog set II (COSII) markers.

Wu F, Eannetta NT, Xu Y, Tanksley SD.

Theor Appl Genet. 2009 Mar;118(5):927-35. doi: 10.1007/s00122-008-0950-9. Epub 2009 Jan 9.


Genome evolution in diploid and tetraploid Coffea species as revealed by comparative analysis of orthologous genome segments.

Cenci A, Combes MC, Lashermes P.

Plant Mol Biol. 2012 Jan;78(1-2):135-45. doi: 10.1007/s11103-011-9852-3. Epub 2011 Nov 16.


Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts.

Lin C, Mueller LA, Mc Carthy J, Crouzillat D, Pétiard V, Tanksley SD.

Theor Appl Genet. 2005 Dec;112(1):114-30. Epub 2005 Nov 5.


Development of new genomic microsatellite markers from robusta coffee (Coffea canephora Pierre ex A. Froehner) showing broad cross-species transferability and utility in genetic studies.

Hendre PS, Phanindranath R, Annapurna V, Lalremruata A, Aggarwal RK.

BMC Plant Biol. 2008 Apr 30;8:51. doi: 10.1186/1471-2229-8-51.


An EST-based analysis identifies new genes and reveals distinctive gene expression features of Coffea arabica and Coffea canephora.

Mondego JM, Vidal RO, Carazzolle MF, Tokuda EK, Parizzi LP, Costa GG, Pereira LF, Andrade AC, Colombo CA, Vieira LG, Pereira GA; Brazilian Coffee Genome Project Consortium.

BMC Plant Biol. 2011 Feb 8;11:30. doi: 10.1186/1471-2229-11-30.


Organization and molecular evolution of a disease-resistance gene cluster in coffee trees.

Ribas AF, Cenci A, Combes MC, Etienne H, Lashermes P.

BMC Genomics. 2011 May 16;12:240. doi: 10.1186/1471-2164-12-240.


Patterns of sequence polymorphism in the fleshless berry locus in cultivated and wild Vitis vinifera accessions.

Houel C, Bounon R, Chaïb J, Guichard C, Péros JP, Bacilieri R, Dereeper A, Canaguier A, Lacombe T, N'Diaye A, Le Paslier MC, Vernerey MS, Coriton O, Brunel D, This P, Torregrosa L, Adam-Blondon AF.

BMC Plant Biol. 2010 Dec 22;10:284. doi: 10.1186/1471-2229-10-284.


COSII genetic maps of two diploid Nicotiana species provide a detailed picture of synteny with tomato and insights into chromosome evolution in tetraploid N. tabacum.

Wu F, Eannetta NT, Xu Y, Plieske J, Ganal M, Pozzi C, Bakaher N, Tanksley SD.

Theor Appl Genet. 2010 Feb;120(4):809-27. doi: 10.1007/s00122-009-1206-z. Epub 2009 Nov 17.


MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.

Plechakova O, Tranchant-Dubreuil C, Benedet F, Couderc M, Tinaut A, Viader V, De Block P, Hamon P, Campa C, de Kochko A, Hamon S, Poncet V.

BMC Plant Biol. 2009 Sep 29;9:123. doi: 10.1186/1471-2229-9-123.


Construction of a comparative genetic map in faba bean (Vicia faba L.); conservation of genome structure with Lens culinaris.

Ellwood SR, Phan HT, Jordan M, Hane J, Torres AM, Avila CM, Cruz-Izquierdo S, Oliver RP.

BMC Genomics. 2008 Aug 9;9:380. doi: 10.1186/1471-2164-9-380.

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