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Items: 1 to 20 of 126

1.

Asymmetric stochastic switching driven by intrinsic molecular noise.

Frigola D, Casanellas L, Sancho JM, Ibañes M.

PLoS One. 2012;7(2):e31407. doi: 10.1371/journal.pone.0031407. Epub 2012 Feb 21.

2.

Modeling heterogeneous responsiveness of intrinsic apoptosis pathway.

Ooi HK, Ma L.

BMC Syst Biol. 2013 Jul 23;7:65. doi: 10.1186/1752-0509-7-65.

3.

Emergent Bistability and Switching in a Nonequilibrium Crystal.

Gogia G, Burton JC.

Phys Rev Lett. 2017 Oct 27;119(17):178004. doi: 10.1103/PhysRevLett.119.178004. Epub 2017 Oct 26.

PMID:
29219465
4.

Modeling cell-to-cell stochastic variability in intrinsic apoptosis pathway.

Ooi HK, Ma L.

Conf Proc IEEE Eng Med Biol Soc. 2012;2012:5498-501. doi: 10.1109/EMBC.2012.6347239. Review.

PMID:
23367174
5.

A variational approach to the stochastic aspects of cellular signal transduction.

Lan Y, Wolynes PG, Papoian GA.

J Chem Phys. 2006 Sep 28;125(12):124106.

PMID:
17014165
6.

Stochastic models for regulatory networks of the genetic toggle switch.

Tian T, Burrage K.

Proc Natl Acad Sci U S A. 2006 May 30;103(22):8372-7. Epub 2006 May 19.

7.

Globally coupled stochastic two-state oscillators: fluctuations due to finite numbers.

Pinto IL, Escaff D, Harbola U, Rosas A, Lindenberg K.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 May;89(5):052143. Epub 2014 May 29.

PMID:
25353775
8.

DNA-Binding Kinetics Determines the Mechanism of Noise-Induced Switching in Gene Networks.

Tse MJ, Chu BK, Roy M, Read EL.

Biophys J. 2015 Oct 20;109(8):1746-57. doi: 10.1016/j.bpj.2015.08.035.

9.

The effects of reversibility and noise on stochastic phosphorylation cycles and cascades.

Miller CA, Beard DA.

Biophys J. 2008 Sep;95(5):2183-92. doi: 10.1529/biophysj.107.126185. Epub 2008 May 30.

10.

Computation of steady-state probability distributions in stochastic models of cellular networks.

Hallen M, Li B, Tanouchi Y, Tan C, West M, You L.

PLoS Comput Biol. 2011 Oct;7(10):e1002209. doi: 10.1371/journal.pcbi.1002209. Epub 2011 Oct 13.

11.

Predicting rates of cell state change caused by stochastic fluctuations using a data-driven landscape model.

Sisan DR, Halter M, Hubbard JB, Plant AL.

Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19262-7. doi: 10.1073/pnas.1207544109. Epub 2012 Oct 30.

12.

Logical-continuous modelling of post-translationally regulated bistability of curli fiber expression in Escherichia coli.

Yousef KP, Streck A, Schütte C, Siebert H, Hengge R, von Kleist M.

BMC Syst Biol. 2015 Jul 23;9:39. doi: 10.1186/s12918-015-0183-x.

13.

Multiscale Hy3S: hybrid stochastic simulation for supercomputers.

Salis H, Sotiropoulos V, Kaznessis YN.

BMC Bioinformatics. 2006 Feb 24;7:93.

14.
15.

Transitions in genetic toggle switches driven by dynamic disorder in rate coefficients.

Chen H, Thill P, Cao J.

J Chem Phys. 2016 May 7;144(17):175104. doi: 10.1063/1.4948461.

16.

Extrinsic noise passing through a Michaelis-Menten reaction: a universal response of a genetic switch.

Ochab-Marcinek A.

J Theor Biol. 2010 Apr 21;263(4):510-20. doi: 10.1016/j.jtbi.2009.12.028. Epub 2010 Jan 4.

PMID:
20045705
17.

Stochastic oscillations induced by intrinsic fluctuations in a self-repressing gene.

Wang J, Lefranc M, Thommen Q.

Biophys J. 2014 Nov 18;107(10):2403-16. doi: 10.1016/j.bpj.2014.09.042.

18.

Toward a microscopic model of bidirectional synaptic plasticity.

Castellani GC, Bazzani A, Cooper LN.

Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):14091-5. doi: 10.1073/pnas.0905988106. Epub 2009 Jul 30.

19.

Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations.

Samoilov M, Plyasunov S, Arkin AP.

Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2310-5. Epub 2005 Feb 8.

20.

How noise statistics impact models of enzyme cycles.

Warmflash A, Adamson DN, Dinner AR.

J Chem Phys. 2008 Jun 14;128(22):225101. doi: 10.1063/1.2929841.

PMID:
18554058

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