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Items: 1 to 20 of 83

1.

Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy.

Tang H, Woodhouse MR, Cheng F, Schnable JC, Pedersen BS, Conant G, Wang X, Freeling M, Pires JC.

Genetics. 2012 Apr;190(4):1563-74. doi: 10.1534/genetics.111.137349. Epub 2012 Feb 2.

2.

Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa.

Cheng F, Wu J, Fang L, Sun S, Liu B, Lin K, Bonnema G, Wang X.

PLoS One. 2012;7(5):e36442. doi: 10.1371/journal.pone.0036442. Epub 2012 May 2.

3.

Comparative mapping, genomic structure, and expression analysis of eight pseudo-response regulator genes in Brassica rapa.

Kim JA, Kim JS, Hong JK, Lee YH, Choi BS, Seol YJ, Jeon CH.

Mol Genet Genomics. 2012 May;287(5):373-88. doi: 10.1007/s00438-012-0682-z. Epub 2012 Apr 1.

PMID:
22466714
4.

Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication.

Mun JH, Kwon SJ, Yang TJ, Seol YJ, Jin M, Kim JA, Lim MH, Kim JS, Baek S, Choi BS, Yu HJ, Kim DS, Kim N, Lim KB, Lee SI, Hahn JH, Lim YP, Bancroft I, Park BS.

Genome Biol. 2009;10(10):R111. doi: 10.1186/gb-2009-10-10-r111. Epub 2009 Oct 12.

5.

The genome of the mesopolyploid crop species Brassica rapa.

Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F, Huang S, Li X, Hua W, Wang J, Wang X, Freeling M, Pires JC, Paterson AH, Chalhoub B, Wang B, Hayward A, Sharpe AG, Park BS, Weisshaar B, Liu B, Li B, Liu B, Tong C, Song C, Duran C, Peng C, Geng C, Koh C, Lin C, Edwards D, Mu D, Shen D, Soumpourou E, Li F, Fraser F, Conant G, Lassalle G, King GJ, Bonnema G, Tang H, Wang H, Belcram H, Zhou H, Hirakawa H, Abe H, Guo H, Wang H, Jin H, Parkin IA, Batley J, Kim JS, Just J, Li J, Xu J, Deng J, Kim JA, Li J, Yu J, Meng J, Wang J, Min J, Poulain J, Wang J, Hatakeyama K, Wu K, Wang L, Fang L, Trick M, Links MG, Zhao M, Jin M, Ramchiary N, Drou N, Berkman PJ, Cai Q, Huang Q, Li R, Tabata S, Cheng S, Zhang S, Zhang S, Huang S, Sato S, Sun S, Kwon SJ, Choi SR, Lee TH, Fan W, Zhao X, Tan X, Xu X, Wang Y, Qiu Y, Yin Y, Li Y, Du Y, Liao Y, Lim Y, Narusaka Y, Wang Y, Wang Z, Li Z, Wang Z, Xiong Z, Zhang Z; Brassica rapa Genome Sequencing Project Consortium.

Nat Genet. 2011 Aug 28;43(10):1035-9. doi: 10.1038/ng.919.

PMID:
21873998
6.

Deciphering the diploid ancestral genome of the Mesohexaploid Brassica rapa.

Cheng F, Mandáková T, Wu J, Xie Q, Lysak MA, Wang X.

Plant Cell. 2013 May;25(5):1541-54. doi: 10.1105/tpc.113.110486. Epub 2013 May 7.

7.

Sequence-level comparative analysis of the Brassica napus genome around two stearoyl-ACP desaturase loci.

Cho K, O'Neill CM, Kwon SJ, Yang TJ, Smooker AM, Fraser F, Bancroft I.

Plant J. 2010 Feb;61(4):591-9. doi: 10.1111/j.1365-313X.2009.04084.x. Epub 2009 Nov 19.

8.

Sequence and structure of Brassica rapa chromosome A3.

Mun JH, Kwon SJ, Seol YJ, Kim JA, Jin M, Kim JS, Lim MH, Lee SI, Hong JK, Park TH, Lee SC, Kim BJ, Seo MS, Baek S, Lee MJ, Shin JY, Hahn JH, Hwang YJ, Lim KB, Park JY, Lee J, Yang TJ, Yu HJ, Choi IY, Choi BS, Choi SR, Ramchiary N, Lim YP, Fraser F, Drou N, Soumpourou E, Trick M, Bancroft I, Sharpe AG, Parkin IA, Batley J, Edwards D, Park BS.

Genome Biol. 2010;11(9):R94. doi: 10.1186/gb-2010-11-9-r94. Epub 2010 Sep 27.

9.

The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the Paleohexaploid Brassica rapa.

Subramaniam S, Wang X, Freeling M, Pires JC.

Genome Biol Evol. 2013;5(4):646-60. doi: 10.1093/gbe/evt035.

10.

Loss/retention and evolution of NBS-encoding genes upon whole genome triplication of Brassica rapa.

Wu P, Shao ZQ, Wu XZ, Wang Q, Wang B, Chen JQ, Hang YY, Xue JY.

Gene. 2014 Apr 25;540(1):54-61. doi: 10.1016/j.gene.2014.01.082. Epub 2014 Feb 24.

PMID:
24576745
11.

Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa.

Yang TJ, Kim JS, Kwon SJ, Lim KB, Choi BS, Kim JA, Jin M, Park JY, Lim MH, Kim HI, Lim YP, Kang JJ, Hong JH, Kim CB, Bhak J, Bancroft I, Park BS.

Plant Cell. 2006 Jun;18(6):1339-47. Epub 2006 Apr 21.

12.

Genome-wide identification of NBS-encoding resistance genes in Brassica rapa.

Mun JH, Yu HJ, Park S, Park BS.

Mol Genet Genomics. 2009 Dec;282(6):617-31. doi: 10.1007/s00438-009-0492-0. Epub 2009 Oct 17.

13.

Comparative genomic in situ hybridization (cGISH) analysis of the genomic relationships among Sinapis arvensis, Brassica rapa and Brassica nigra.

Mao S, Han Y, Wu X, An T, Tang J, Shen J, Li Z.

Hereditas. 2012 Jun;149(3):86-90. doi: 10.1111/j.1601-5223.2012.02248.x. Epub 2012 Jul 4.

14.

Characterization of the centromere and peri-centromere retrotransposons in Brassica rapa and their distribution in related Brassica species.

Lim KB, Yang TJ, Hwang YJ, Kim JS, Park JY, Kwon SJ, Kim J, Choi BS, Lim MH, Jin M, Kim HI, de Jong H, Bancroft I, Lim Y, Park BS.

Plant J. 2007 Jan;49(2):173-83. Epub 2006 Dec 6. Erratum in: Plant J. 2007 Feb;49(4):765.

15.

Genome-wide discovery of DNA polymorphism in Brassica rapa.

Park S, Yu HJ, Mun JH, Lee SC.

Mol Genet Genomics. 2010 Feb;283(2):135-45. doi: 10.1007/s00438-009-0504-0. Epub 2009 Dec 19.

PMID:
20024583
16.

Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea.

Cheng F, Sun R, Hou X, Zheng H, Zhang F, Zhang Y, Liu B, Liang J, Zhuang M, Liu Y, Liu D, Wang X, Li P, Liu Y, Lin K, Bucher J, Zhang N, Wang Y, Wang H, Deng J, Liao Y, Wei K, Zhang X, Fu L, Hu Y, Liu J, Cai C, Zhang S, Zhang S, Li F, Zhang H, Zhang J, Guo N, Liu Z, Liu J, Sun C, Ma Y, Zhang H, Cui Y, Freeling MR, Borm T, Bonnema G, Wu J, Wang X.

Nat Genet. 2016 Oct;48(10):1218-24. doi: 10.1038/ng.3634. Epub 2016 Aug 15.

PMID:
27526322
17.

Complexity of genome evolution by segmental rearrangement in Brassica rapa revealed by sequence-level analysis.

Trick M, Kwon SJ, Choi SR, Fraser F, Soumpourou E, Drou N, Wang Z, Lee SY, Yang TJ, Mun JH, Paterson AH, Town CD, Pires JC, Pyo Lim Y, Park BS, Bancroft I.

BMC Genomics. 2009 Nov 18;10:539. doi: 10.1186/1471-2164-10-539.

18.

Patterns of evolutionary conservation of ascorbic acid-related genes following whole-genome triplication in Brassica rapa.

Duan W, Song X, Liu T, Huang Z, Ren J, Hou X, Du J, Li Y.

Genome Biol Evol. 2014 Dec 31;7(1):299-313. doi: 10.1093/gbe/evu293.

19.

Genome-wide identification of glucosinolate synthesis genes in Brassica rapa.

Zang YX, Kim HU, Kim JA, Lim MH, Jin M, Lee SC, Kwon SJ, Lee SI, Hong JK, Park TH, Mun JH, Seol YJ, Hong SB, Park BS.

FEBS J. 2009 Jul;276(13):3559-74. doi: 10.1111/j.1742-4658.2009.07076.x. Epub 2009 May 18.

20.

Extraction of the Constituent Subgenomes of the Natural Allopolyploid Rapeseed (Brassica napus L.).

Zhu B, Tu Y, Zeng P, Ge X, Li Z.

Genetics. 2016 Nov;204(3):1015-1027. doi: 10.1534/genetics.116.190967. Epub 2016 Sep 16.

PMID:
27638420

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