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Items: 1 to 20 of 112

1.

Molecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity.

Busser BW, Shokri L, Jaeger SA, Gisselbrecht SS, Singhania A, Berger MF, Zhou B, Bulyk ML, Michelson AM.

Development. 2012 Mar;139(6):1164-74. doi: 10.1242/dev.077362. Epub 2012 Feb 1.

2.

Contribution of distinct homeodomain DNA binding specificities to Drosophila embryonic mesodermal cell-specific gene expression programs.

Busser BW, Gisselbrecht SS, Shokri L, Tansey TR, Gamble CE, Bulyk ML, Michelson AM.

PLoS One. 2013 Jul 26;8(7):e69385. doi: 10.1371/journal.pone.0069385. Print 2013.

3.

Org-1, the Drosophila ortholog of Tbx1, is a direct activator of known identity genes during muscle specification.

Schaub C, Nagaso H, Jin H, Frasch M.

Development. 2012 Mar;139(5):1001-12. doi: 10.1242/dev.073890.

4.

A Hox Transcription Factor Collective Binds a Highly Conserved Distal-less cis-Regulatory Module to Generate Robust Transcriptional Outcomes.

Uhl JD, Zandvakili A, Gebelein B.

PLoS Genet. 2016 Apr 8;12(4):e1005981. doi: 10.1371/journal.pgen.1005981. eCollection 2016 Apr.

5.
6.

Integrative analysis of the zinc finger transcription factor Lame duck in the Drosophila myogenic gene regulatory network.

Busser BW, Huang D, Rogacki KR, Lane EA, Shokri L, Ni T, Gamble CE, Gisselbrecht SS, Zhu J, Bulyk ML, Ovcharenko I, Michelson AM.

Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20768-73. doi: 10.1073/pnas.1210415109. Epub 2012 Nov 26.

7.

The role of the NK-homeobox gene slouch (S59) in somatic muscle patterning.

Knirr S, Azpiazu N, Frasch M.

Development. 1999 Oct;126(20):4525-35.

8.

A machine learning approach for identifying novel cell type-specific transcriptional regulators of myogenesis.

Busser BW, Taher L, Kim Y, Tansey T, Bloom MJ, Ovcharenko I, Michelson AM.

PLoS Genet. 2012;8(3):e1002531. doi: 10.1371/journal.pgen.1002531. Epub 2012 Mar 8.

9.
10.

Genome-wide tissue-specific occupancy of the Hox protein Ultrabithorax and Hox cofactor Homothorax in Drosophila.

Slattery M, Ma L, Négre N, White KP, Mann RS.

PLoS One. 2011 Apr 5;6(4):e14686. doi: 10.1371/journal.pone.0014686.

11.

A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data.

He X, Chen CC, Hong F, Fang F, Sinha S, Ng HH, Zhong S.

PLoS One. 2009 Dec 1;4(12):e8155. doi: 10.1371/journal.pone.0008155.

12.

Drosophila araucan and caupolican integrate intrinsic and signalling inputs for the acquisition by muscle progenitors of the lateral transverse fate.

Carrasco-Rando M, Tutor AS, Prieto-Sánchez S, González-Pérez E, Barrios N, Letizia A, Martín P, Campuzano S, Ruiz-Gómez M.

PLoS Genet. 2011 Jul;7(7):e1002186. doi: 10.1371/journal.pgen.1002186. Epub 2011 Jul 21.

13.

cis-regulatory analysis of the Drosophila pdm locus reveals a diversity of neural enhancers.

Ross J, Kuzin A, Brody T, Odenwald WF.

BMC Genomics. 2015 Sep 16;16:700. doi: 10.1186/s12864-015-1897-2.

14.

Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization.

Menoret D, Santolini M, Fernandes I, Spokony R, Zanet J, Gonzalez I, Latapie Y, Ferrer P, Rouault H, White KP, Besse P, Hakim V, Aerts S, Payre F, Plaza S.

Genome Biol. 2013 Aug 23;14(8):R86. doi: 10.1186/gb-2013-14-8-r86.

15.

Widespread evidence of cooperative DNA binding by transcription factors in Drosophila development.

Kazemian M, Pham H, Wolfe SA, Brodsky MH, Sinha S.

Nucleic Acids Res. 2013 Sep;41(17):8237-52. doi: 10.1093/nar/gkt598. Epub 2013 Jul 11.

16.

Consequences of eukaryotic enhancer architecture for gene expression dynamics, development, and fitness.

Ludwig MZ, Manu, Kittler R, White KP, Kreitman M.

PLoS Genet. 2011 Nov;7(11):e1002364. doi: 10.1371/journal.pgen.1002364. Epub 2011 Nov 10.

17.

Computational identification of Ftz/Ftz-F1 downstream target genes.

Bowler T, Kosman D, Licht JD, Pick L.

Dev Biol. 2006 Nov 1;299(1):78-90. Epub 2006 Jul 12.

19.
20.

Low affinity binding site clusters confer hox specificity and regulatory robustness.

Crocker J, Abe N, Rinaldi L, McGregor AP, Frankel N, Wang S, Alsawadi A, Valenti P, Plaza S, Payre F, Mann RS, Stern DL.

Cell. 2015 Jan 15;160(1-2):191-203. doi: 10.1016/j.cell.2014.11.041. Epub 2014 Dec 31.

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