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Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment.

Bumgarner SL, Neuert G, Voight BF, Symbor-Nagrabska A, Grisafi P, van Oudenaarden A, Fink GR.

Mol Cell. 2012 Feb 24;45(4):470-82. doi: 10.1016/j.molcel.2011.11.029. Epub 2012 Jan 19.


Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast.

Bumgarner SL, Dowell RD, Grisafi P, Gifford DK, Fink GR.

Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18321-6. doi: 10.1073/pnas.0909641106. Epub 2009 Sep 30.


The Histone Acetyltransferase Gcn5 Regulates ncRNA-ICR1 and FLO11 Expression during Pseudohyphal Development in Saccharomyces cerevisiae.

Wang LC, Montalvo-Munoz F, Tsai YC, Liang CY, Chang CC, Lo WS.

Biomed Res Int. 2015;2015:284692. doi: 10.1155/2015/284692. Epub 2015 Apr 2.


Life without RNAi: noncoding RNAs and their functions in Saccharomyces cerevisiae.

Harrison BR, Yazgan O, Krebs JE.

Biochem Cell Biol. 2009 Oct;87(5):767-79. doi: 10.1139/O09-043. Review.


Epigenetic and conventional regulation is distributed among activators of FLO11 allowing tuning of population-level heterogeneity in its expression.

Octavio LM, Gedeon K, Maheshri N.

PLoS Genet. 2009 Oct;5(10):e1000673. doi: 10.1371/journal.pgen.1000673. Epub 2009 Oct 2.


Chromatin modulation at the FLO11 promoter of Saccharomyces cerevisiae by HDAC and Swi/Snf complexes.

Barrales RR, Korber P, Jimenez J, Ibeas JI.

Genetics. 2012 Jul;191(3):791-803. doi: 10.1534/genetics.112.140301. Epub 2012 Apr 27.


Identification of novel activation mechanisms for FLO11 regulation in Saccharomyces cerevisiae.

Barrales RR, Jimenez J, Ibeas JI.

Genetics. 2008 Jan;178(1):145-56. doi: 10.1534/genetics.107.081315.


A transcription switch toggled by noncoding RNAs.

Winston F.

Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18049-50. doi: 10.1073/pnas.0910272106. Epub 2009 Oct 21. No abstract available.


Intragenic transcription of a noncoding RNA modulates expression of ASP3 in budding yeast.

Huang YC, Chen HT, Teng SC.

RNA. 2010 Nov;16(11):2085-93. doi: 10.1261/rna.2177410. Epub 2010 Sep 3.


Genetic and epigenetic regulation of the FLO gene family generates cell-surface variation in yeast.

Halme A, Bumgarner S, Styles C, Fink GR.

Cell. 2004 Feb 6;116(3):405-15.


Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway.

Samanta MP, Tongprasit W, Sethi H, Chin CS, Stolc V.

Proc Natl Acad Sci U S A. 2006 Mar 14;103(11):4192-7. Epub 2006 Mar 6.


The mRNA decay pathway regulates the expression of the Flo11 adhesin and biofilm formation in Saccharomyces cerevisiae.

Lo TL, Qu Y, Uwamahoro N, Quenault T, Beilharz TH, Traven A.

Genetics. 2012 Aug;191(4):1387-91. doi: 10.1534/genetics.112.141432. Epub 2012 May 17.


Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene.

Martens JA, Laprade L, Winston F.

Nature. 2004 Jun 3;429(6991):571-4.


Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression.

Boorsma A, Lu XJ, Zakrzewska A, Klis FM, Bussemaker HJ.

PLoS One. 2008 Sep 3;3(9):e3112. doi: 10.1371/journal.pone.0003112.


Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6.

Lardenois A, Liu Y, Walther T, Chalmel F, Evrard B, Granovskaia M, Chu A, Davis RW, Steinmetz LM, Primig M.

Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1058-63. doi: 10.1073/pnas.1016459108. Epub 2010 Dec 13.

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