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Items: 1 to 20 of 71

1.

Principal-oscillation-pattern analysis of gene expression.

Wang D, Arapostathis A, Wilke CO, Markey MK.

PLoS One. 2012;7(1):e28805. doi: 10.1371/journal.pone.0028805. Epub 2012 Jan 10.

2.

Identifying cooperativity among transcription factors controlling the cell cycle in yeast.

Banerjee N, Zhang MQ.

Nucleic Acids Res. 2003 Dec 1;31(23):7024-31.

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5.

Reporter-based synthetic genetic array analysis: a functional genomics approach for investigating the cell cycle in Saccharomyces cerevisiae.

Sassi HE, Bastajian N, Kainth P, Andrews BJ.

Methods Mol Biol. 2009;548:55-73. doi: 10.1007/978-1-59745-540-4_4.

PMID:
19521819
6.

Promoter analysis of co-regulated genes in the yeast genome.

Zhang MQ.

Comput Chem. 1999 Jun 15;23(3-4):233-50.

PMID:
10404618
7.

Statistical resynchronization and Bayesian detection of periodically expressed genes.

Lu X, Zhang W, Qin ZS, Kwast KE, Liu JS.

Nucleic Acids Res. 2004 Jan 22;32(2):447-55. Print 2004.

8.

Phase Coupled Meta-analysis: sensitive detection of oscillations in cell cycle gene expression, as applied to fission yeast.

Pyne S, Gutman R, Kim CS, Futcher B.

BMC Genomics. 2009 Sep 17;10:440. doi: 10.1186/1471-2164-10-440.

9.

Quantitative inference of dynamic regulatory pathways via microarray data.

Chang WC, Li CW, Chen BS.

BMC Bioinformatics. 2005 Mar 7;6:44.

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12.

Clustering change patterns using Fourier transformation with time-course gene expression data.

Kim J.

Methods Mol Biol. 2011;734:201-20. doi: 10.1007/978-1-61779-086-7_10.

PMID:
21468991
13.

A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression.

Cohen BA, Mitra RD, Hughes JD, Church GM.

Nat Genet. 2000 Oct;26(2):183-6.

PMID:
11017073
14.

Geometry of gene expression dynamics.

Rifkin SA, Kim J.

Bioinformatics. 2002 Sep;18(9):1176-83.

PMID:
12217909
15.
16.

Modelling the network of cell cycle transcription factors in the yeast Saccharomyces cerevisiae.

Cokus S, Rose S, Haynor D, Grønbech-Jensen N, Pellegrini M.

BMC Bioinformatics. 2006 Aug 16;7:381.

17.

Constraint structure analysis of gene expression.

Rifkin SA, Atteson K, Kim J.

Funct Integr Genomics. 2000 Nov;1(3):174-85.

PMID:
11793235
18.

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

Science. 2002 Oct 25;298(5594):799-804.

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20.

A copula method for modeling directional dependence of genes.

Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

BMC Bioinformatics. 2008 May 1;9:225. doi: 10.1186/1471-2105-9-225.

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