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Items: 1 to 20 of 82

1.

Phosphorylation in protein-protein binding: effect on stability and function.

Nishi H, Hashimoto K, Panchenko AR.

Structure. 2011 Dec 7;19(12):1807-15. doi: 10.1016/j.str.2011.09.021.

2.

Regulation of protein-protein binding by coupling between phosphorylation and intrinsic disorder: analysis of human protein complexes.

Nishi H, Fong JH, Chang C, Teichmann SA, Panchenko AR.

Mol Biosyst. 2013 Jul;9(7):1620-6. doi: 10.1039/c3mb25514j. Epub 2013 Jan 30.

3.

Structural features and evolution of protein-protein interactions.

Von Eichborn J, G√ľnther S, Preissner R.

Genome Inform. 2010 Jan;22:1-10.

4.

Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization.

Hashimoto K, Nishi H, Bryant S, Panchenko AR.

Phys Biol. 2011 Jun;8(3):035007. doi: 10.1088/1478-3975/8/3/035007. Epub 2011 May 13. Review.

5.

Functional divergence and evolutionary turnover in mammalian phosphoproteomes.

Freschi L, Osseni M, Landry CR.

PLoS Genet. 2014 Jan;10(1):e1004062. doi: 10.1371/journal.pgen.1004062. Epub 2014 Jan 23.

6.

Structural characterisation and functional significance of transient protein-protein interactions.

Nooren IM, Thornton JM.

J Mol Biol. 2003 Jan 31;325(5):991-1018.

PMID:
12527304
7.
8.

Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling.

Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A.

PLoS Comput Biol. 2009 Jan;5(1):e1000267. doi: 10.1371/journal.pcbi.1000267. Epub 2009 Jan 23.

9.

The subunit interfaces of weakly associated homodimeric proteins.

Dey S, Pal A, Chakrabarti P, Janin J.

J Mol Biol. 2010 Apr 23;398(1):146-60. doi: 10.1016/j.jmb.2010.02.020. Epub 2010 Feb 13.

PMID:
20156457
10.

A dynamic view of domain-motif interactions.

Akiva E, Friedlander G, Itzhaki Z, Margalit H.

PLoS Comput Biol. 2012 Jan;8(1):e1002341. doi: 10.1371/journal.pcbi.1002341. Epub 2012 Jan 12. Erratum in: PLoS Comput Biol. 2012 Jan;8(1). doi:10.1371/annotation/2e21b1b9-46de-4cbe-a2a4-b4598d90d492.

11.

Protein promiscuity: drug resistance and native functions--HIV-1 case.

Fern√°ndez A, Tawfik DS, Berkhout B, Sanders R, Kloczkowski A, Sen T, Jernigan B.

J Biomol Struct Dyn. 2005 Jun;22(6):615-24.

PMID:
15842167
12.

Exploring the charge space of protein-protein association: a proteomic study.

Shaul Y, Schreiber G.

Proteins. 2005 Aug 15;60(3):341-52.

PMID:
15887221
13.

Structure, function, and evolution of transient and obligate protein-protein interactions.

Mintseris J, Weng Z.

Proc Natl Acad Sci U S A. 2005 Aug 2;102(31):10930-5. Epub 2005 Jul 25.

14.

Conserved residue clusters at protein-protein interfaces and their use in binding site identification.

Guharoy M, Chakrabarti P.

BMC Bioinformatics. 2010 May 27;11:286. doi: 10.1186/1471-2105-11-286.

15.

From genome to function: analysis of multi-protein complexes and protein phosphorylation.

Neubauer G, Wilm M.

Curr Opin Mol Ther. 1999 Dec;1(6):695-701. Review.

PMID:
19629866
16.

Specificity of molecular interactions in transient protein-protein interaction interfaces.

Cho KI, Lee K, Lee KH, Kim D, Lee D.

Proteins. 2006 Nov 15;65(3):593-606.

PMID:
16948160
17.

Thermodynamics of interfacial changes in a protein-protein complex.

Das A, Chakrabarti J, Ghosh M.

Mol Biosyst. 2014 Mar 4;10(3):437-45. doi: 10.1039/c3mb70249a. Epub 2013 Dec 13.

PMID:
24336889
18.

Weak functional constraints on phosphoproteomes.

Landry CR, Levy ED, Michnick SW.

Trends Genet. 2009 May;25(5):193-7. doi: 10.1016/j.tig.2009.03.003. Epub 2009 Apr 6.

PMID:
19349092
19.

An evolutionary conservation-based method for refining and reranking protein complex structures.

Akbal-Delibas B, Hashmi I, Shehu A, Haspel N.

J Bioinform Comput Biol. 2012 Jun;10(3):1242002. doi: 10.1142/S0219720012420024.

PMID:
22809378
20.

Prediction of protein-protein interactions: unifying evolution and structure at protein interfaces.

Tuncbag N, Gursoy A, Keskin O.

Phys Biol. 2011 Jun;8(3):035006. doi: 10.1088/1478-3975/8/3/035006. Epub 2011 May 13. Review.

PMID:
21572173

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