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Items: 1 to 20 of 104

1.

Mispaired rNMPs in DNA are mutagenic and are targets of mismatch repair and RNases H.

Shen Y, Koh KD, Weiss B, Storici F.

Nat Struct Mol Biol. 2011 Dec 4;19(1):98-104. doi: 10.1038/nsmb.2176.

PMID:
22139012
2.

Redundancy in ribonucleotide excision repair: Competition, compensation, and cooperation.

Vaisman A, Woodgate R.

DNA Repair (Amst). 2015 May;29:74-82. doi: 10.1016/j.dnarep.2015.02.008. Review.

3.

Removal of misincorporated ribonucleotides from prokaryotic genomes: an unexpected role for nucleotide excision repair.

Vaisman A, McDonald JP, Huston D, Kuban W, Liu L, Van Houten B, Woodgate R.

PLoS Genet. 2013 Nov;9(11):e1003878. doi: 10.1371/journal.pgen.1003878.

4.

Mutagenic processing of ribonucleotides in DNA by yeast topoisomerase I.

Kim N, Huang SN, Williams JS, Li YC, Clark AB, Cho JE, Kunkel TA, Pommier Y, Jinks-Robertson S.

Science. 2011 Jun 24;332(6037):1561-4. doi: 10.1126/science.1205016.

5.

Mismatch repair-independent tandem repeat sequence instability resulting from ribonucleotide incorporation by DNA polymerase ε.

Clark AB, Lujan SA, Kissling GE, Kunkel TA.

DNA Repair (Amst). 2011 May 5;10(5):476-82. doi: 10.1016/j.dnarep.2011.02.001.

6.

Identification of proteins of Escherichia coli and Saccharomyces cerevisiae that specifically bind to C/C mismatches in DNA.

Nakahara T, Zhang QM, Hashiguchi K, Yonei S.

Nucleic Acids Res. 2000 Jul 1;28(13):2551-6.

7.

Cost of rNTP/dNTP pool imbalance at the replication fork.

Yao NY, Schroeder JW, Yurieva O, Simmons LA, O'Donnell ME.

Proc Natl Acad Sci U S A. 2013 Aug 6;110(32):12942-7. doi: 10.1073/pnas.1309506110.

8.

Ribonucleotides misincorporated into DNA act as strand-discrimination signals in eukaryotic mismatch repair.

Ghodgaonkar MM, Lazzaro F, Olivera-Pimentel M, Artola-Borán M, Cejka P, Reijns MA, Jackson AP, Plevani P, Muzi-Falconi M, Jiricny J.

Mol Cell. 2013 May 9;50(3):323-32. doi: 10.1016/j.molcel.2013.03.019.

9.

Ribonucleotides are signals for mismatch repair of leading-strand replication errors.

Lujan SA, Williams JS, Clausen AR, Clark AB, Kunkel TA.

Mol Cell. 2013 May 9;50(3):437-43. doi: 10.1016/j.molcel.2013.03.017.

10.

Measuring the elasticity of ribonucleotide(s)-containing DNA molecules using AFM.

Koh KD, Chiu HC, Riedo E, Storici F.

Methods Mol Biol. 2015;1297:43-57. doi: 10.1007/978-1-4939-2562-9_3.

PMID:
25895994
11.
12.

Rapid kinetics of mismatch repair of heteroduplex DNA that is formed during recombination in yeast.

Haber JE, Ray BL, Kolb JM, White CI.

Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3363-7.

14.

Investigating the mechanisms of ribonucleotide excision repair in Escherichia coli.

Vaisman A, McDonald JP, Noll S, Huston D, Loeb G, Goodman MF, Woodgate R.

Mutat Res. 2014 Mar;761:21-33. doi: 10.1016/j.mrfmmm.2014.01.005.

15.

Mechanisms employed by Escherichia coli to prevent ribonucleotide incorporation into genomic DNA by Pol V.

McDonald JP, Vaisman A, Kuban W, Goodman MF, Woodgate R.

PLoS Genet. 2012;8(11):e1003030. doi: 10.1371/journal.pgen.1003030.

16.

Frequent incorporation of ribonucleotides during HIV-1 reverse transcription and their attenuated repair in macrophages.

Kennedy EM, Amie SM, Bambara RA, Kim B.

J Biol Chem. 2012 Apr 20;287(17):14280-8. doi: 10.1074/jbc.M112.348482.

17.

Bidirectional excision in methyl-directed mismatch repair.

Grilley M, Griffith J, Modrich P.

J Biol Chem. 1993 Jun 5;268(16):11830-7.

18.
19.

Proofreading of ribonucleotides inserted into DNA by yeast DNA polymerase ɛ.

Williams JS, Clausen AR, Nick McElhinny SA, Watts BE, Johansson E, Kunkel TA.

DNA Repair (Amst). 2012 Aug 1;11(8):649-56. doi: 10.1016/j.dnarep.2012.05.004.

20.

RNase H and postreplication repair protect cells from ribonucleotides incorporated in DNA.

Lazzaro F, Novarina D, Amara F, Watt DL, Stone JE, Costanzo V, Burgers PM, Kunkel TA, Plevani P, Muzi-Falconi M.

Mol Cell. 2012 Jan 13;45(1):99-110. doi: 10.1016/j.molcel.2011.12.019.

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