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Items: 1 to 20 of 167

1.

Quantification of protein-DNA interactions by in vivo chromatin immunoprecipitation in yeast.

Pascual-Ahuir A, Proft M.

Methods Mol Biol. 2012;809:149-56. doi: 10.1007/978-1-61779-376-9_10.

PMID:
22113274
2.

Chromatin immunoprecipitation to study protein-DNA interactions in budding yeast.

Ezhkova E, Tansey WP.

Methods Mol Biol. 2006;313:225-44.

PMID:
16118437
3.

Mapping genomic targets of DNA helicases by chromatin immunoprecipitation in Saccharomyces cerevisiae.

Cobb J, van Attikum H.

Methods Mol Biol. 2010;587:113-26. doi: 10.1007/978-1-60327-355-8_8.

PMID:
20225145
4.

Detection of transcriptional activators, co-activators, and chromatin remodeling by chromatin immunoprecipitation coupled with real-time PCR.

Erkina TY, Erkine AM.

Methods Mol Biol. 2012;809:279-89. doi: 10.1007/978-1-61779-376-9_19.

PMID:
22113283
5.
6.

Determination of histone acetylation status by chromatin immunoprecipitation.

Galdieri L, Moon J, Vancura A.

Methods Mol Biol. 2012;809:255-65. doi: 10.1007/978-1-61779-376-9_17.

PMID:
22113281
7.

A detailed protocol for chromatin immunoprecipitation in the yeast Saccharomyces cerevisiae.

Grably M, Engelberg D.

Methods Mol Biol. 2010;638:211-24. doi: 10.1007/978-1-60761-611-5_16.

PMID:
20238272
8.

Distinguishing direct versus indirect transcription factor-DNA interactions.

Gordân R, Hartemink AJ, Bulyk ML.

Genome Res. 2009 Nov;19(11):2090-100. doi: 10.1101/gr.094144.109. Epub 2009 Aug 3.

9.

ChIP-on-chip analysis of DNA topoisomerases.

Bermejo R, Katou YM, Shirahige K, Foiani M.

Methods Mol Biol. 2009;582:103-18. doi: 10.1007/978-1-60761-340-4_9.

PMID:
19763945
10.

Faster and easier chromatin immunoprecipitation assay with high sensitivity.

Kohzaki H, Murakami Y.

Proteomics. 2007 Jan;7(1):10-4.

PMID:
17152093
11.

Improved genome-wide localization by ChIP-chip using double-round T7 RNA polymerase-based amplification.

van Bakel H, van Werven FJ, Radonjic M, Brok MO, van Leenen D, Holstege FC, Timmers HT.

Nucleic Acids Res. 2008 Mar;36(4):e21. doi: 10.1093/nar/gkm1144. Epub 2008 Jan 7.

12.

An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.

Liu XS, Brutlag DL, Liu JS.

Nat Biotechnol. 2002 Aug;20(8):835-9. Epub 2002 Jul 8.

PMID:
12101404
13.
14.

Q-PCR in combination with ChIP assays to detect changes in chromatin acetylation.

Irvine RA, Okitsu C, Hsieh CL.

Methods Mol Biol. 2011;791:213-23. doi: 10.1007/978-1-61779-316-5_16.

PMID:
21913082
15.
16.

ChIP-Seq using high-throughput DNA sequencing for genome-wide identification of transcription factor binding sites.

Lefrançois P, Zheng W, Snyder M.

Methods Enzymol. 2010;470:77-104. doi: 10.1016/S0076-6879(10)70004-5. Epub 2010 Mar 1.

PMID:
20946807
17.

Chromatin immunoprecipitation for determining the association of proteins with specific genomic sequences in vivo.

Aparicio O, Geisberg JV, Struhl K.

Curr Protoc Cell Biol. 2004 Sep;Chapter 17:Unit 17.7. doi: 10.1002/0471143030.cb1707s23. Review.

PMID:
18228445
18.

Analysis of in vivo transcription factor recruitment by chromatin immunoprecipitation of mouse embryonic kidney.

Heliot C, Cereghini S.

Methods Mol Biol. 2012;886:275-91. doi: 10.1007/978-1-61779-851-1_25.

PMID:
22639270
19.
20.

Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local.

Goh WS, Orlov Y, Li J, Clarke ND.

PLoS Comput Biol. 2010 Jan 22;6(1):e1000649. doi: 10.1371/journal.pcbi.1000649.

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