Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 404

1.

In silico implementation of synthetic gene networks.

Marchisio MA.

Methods Mol Biol. 2012;813:3-21. doi: 10.1007/978-1-61779-412-4_1. Review.

PMID:
22083733
2.

In silico design of functional DNA constructs.

Villalobos A, Welch M, Minshull J.

Methods Mol Biol. 2012;852:197-213. doi: 10.1007/978-1-61779-564-0_15.

PMID:
22328435
3.

Perspectives on the automatic design of regulatory systems for synthetic biology.

Rodrigo G, Carrera J, Landrain TE, Jaramillo A.

FEBS Lett. 2012 Jul 16;586(15):2037-42. doi: 10.1016/j.febslet.2012.02.031. Epub 2012 Feb 27. Review.

4.

Assembly of BioBrick standard biological parts using three antibiotic assembly.

Shetty R, Lizarazo M, Rettberg R, Knight TF.

Methods Enzymol. 2011;498:311-26. doi: 10.1016/B978-0-12-385120-8.00013-9.

PMID:
21601683
5.

Computational design of synthetic gene circuits with composable parts.

Marchisio MA, Stelling J.

Bioinformatics. 2008 Sep 1;24(17):1903-10. doi: 10.1093/bioinformatics/btn330. Epub 2008 Jun 25.

PMID:
18579565
6.

Synthetic gene networks in mammalian cells.

Weber W, Fussenegger M.

Curr Opin Biotechnol. 2010 Oct;21(5):690-6. doi: 10.1016/j.copbio.2010.07.006. Epub 2010 Aug 4. Review.

PMID:
20691580
7.

Computational design approaches and tools for synthetic biology.

MacDonald JT, Barnes C, Kitney RI, Freemont PS, Stan GB.

Integr Biol (Camb). 2011 Feb;3(2):97-108. doi: 10.1039/c0ib00077a. Epub 2011 Jan 24. Review.

PMID:
21258712
8.

Gene expression complex networks: synthesis, identification, and analysis.

Lopes FM, Cesar RM, Costa Lda F.

J Comput Biol. 2011 Oct;18(10):1353-67. doi: 10.1089/cmb.2010.0118. Epub 2011 May 6.

PMID:
21548810
9.

Genetdes: automatic design of transcriptional networks.

Rodrigo G, Carrera J, Jaramillo A.

Bioinformatics. 2007 Jul 15;23(14):1857-8. Epub 2007 May 7.

PMID:
17485427
10.

Design and construction of synthetic gene networks in mammalian cells.

Karlsson M, Weber W, Fussenegger M.

Methods Mol Biol. 2012;813:359-76. doi: 10.1007/978-1-61779-412-4_22.

PMID:
22083754
11.

AutoBioCAD: full biodesign automation of genetic circuits.

Rodrigo G, Jaramillo A.

ACS Synth Biol. 2013 May 17;2(5):230-6. doi: 10.1021/sb300084h. Epub 2012 Nov 26.

PMID:
23654253
12.

Predicting synthetic gene networks.

di Bernardo D, Marucci L, Menolascina F, Siciliano V.

Methods Mol Biol. 2012;813:57-81. doi: 10.1007/978-1-61779-412-4_4.

PMID:
22083736
13.

Molecular diversity--the toolbox for synthetic gene switches and networks.

Weber W, Fussenegger M.

Curr Opin Chem Biol. 2011 Jun;15(3):414-20. doi: 10.1016/j.cbpa.2011.03.003. Epub 2011 Apr 4. Review.

PMID:
21470897
14.

Computer models. Coming soon to a lab near you: drag-and-drop virtual worlds.

Service RF.

Science. 2011 Feb 11;331(6018):669-71. doi: 10.1126/science.331.6018.669. No abstract available.

PMID:
21310982
15.

Automated assembly of standard biological parts.

Leguia M, Brophy J, Densmore D, Anderson JC.

Methods Enzymol. 2011;498:363-97. doi: 10.1016/B978-0-12-385120-8.00016-4.

PMID:
21601686
16.

ReTRN: a retriever of real transcriptional regulatory network and expression data for evaluating structure learning algorithm.

Li Y, Zhu Y, Bai X, Cai H, Ji W, Guo D.

Genomics. 2009 Nov;94(5):349-54. doi: 10.1016/j.ygeno.2009.08.009. Epub 2009 Aug 25.

17.

Automatic design of digital synthetic gene circuits.

Marchisio MA, Stelling J.

PLoS Comput Biol. 2011 Feb;7(2):e1001083. doi: 10.1371/journal.pcbi.1001083. Epub 2011 Feb 17.

18.

Computational design tools for synthetic biology.

Marchisio MA, Stelling J.

Curr Opin Biotechnol. 2009 Aug;20(4):479-85. doi: 10.1016/j.copbio.2009.08.007. Epub 2009 Sep 14. Review.

PMID:
19758796
19.

Prediction of pairwise gene interaction using threshold logic.

Gowda T, Vrudhula S, Kim S.

Ann N Y Acad Sci. 2009 Mar;1158:276-86. doi: 10.1111/j.1749-6632.2008.03763.x.

PMID:
19348649
20.

Computational methods in synthetic biology: towards computer-aided part design.

Wu K, Rao CV.

Curr Opin Chem Biol. 2012 Aug;16(3-4):318-22. doi: 10.1016/j.cbpa.2012.05.003. Epub 2012 Jun 20. Review.

PMID:
22727029

Supplemental Content

Support Center