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Items: 1 to 20 of 95


Extraction of data deposition statements from the literature: a method for automatically tracking research results.

Névéol A, Wilbur WJ, Lu Z.

Bioinformatics. 2011 Dec 1;27(23):3306-12. doi: 10.1093/bioinformatics/btr573. Epub 2011 Oct 13.


NCBI disease corpus: a resource for disease name recognition and concept normalization.

Doğan RI, Leaman R, Lu Z.

J Biomed Inform. 2014 Feb;47:1-10. doi: 10.1016/j.jbi.2013.12.006. Epub 2014 Jan 3.


Automatic recognition of conceptualization zones in scientific articles and two life science applications.

Liakata M, Saha S, Dobnik S, Batchelor C, Rebholz-Schuhmann D.

Bioinformatics. 2012 Apr 1;28(7):991-1000. doi: 10.1093/bioinformatics/bts071. Epub 2012 Feb 8.


DNorm: disease name normalization with pairwise learning to rank.

Leaman R, Islamaj Dogan R, Lu Z.

Bioinformatics. 2013 Nov 15;29(22):2909-17. doi: 10.1093/bioinformatics/btt474. Epub 2013 Aug 21.


Recommending MeSH terms for annotating biomedical articles.

Huang M, Névéol A, Lu Z.

J Am Med Inform Assoc. 2011 Sep-Oct;18(5):660-7. doi: 10.1136/amiajnl-2010-000055. Epub 2011 May 25.


Retro: concept-based clustering of biomedical topical sets.

Yeganova L, Kim W, Kim S, Wilbur WJ.

Bioinformatics. 2014 Nov 15;30(22):3240-8. doi: 10.1093/bioinformatics/btu514. Epub 2014 Jul 29.


MeSH indexing based on automatically generated summaries.

Jimeno-Yepes AJ, Plaza L, Mork JG, Aronson AR, Díaz A.

BMC Bioinformatics. 2013 Jun 26;14:208. doi: 10.1186/1471-2105-14-208.


Use of Internet audience measurement data to gauge market share for online health information services.

Wood FB, Benson D, LaCroix EM, Siegel ER, Fariss S.

J Med Internet Res. 2005 Jul 1;7(3):e31.


Beyond accuracy: creating interoperable and scalable text-mining web services.

Wei CH, Leaman R, Lu Z.

Bioinformatics. 2016 Jun 15;32(12):1907-10. doi: 10.1093/bioinformatics/btv760. Epub 2016 Feb 16.


tmVar: a text mining approach for extracting sequence variants in biomedical literature.

Wei CH, Harris BR, Kao HY, Lu Z.

Bioinformatics. 2013 Jun 1;29(11):1433-9. doi: 10.1093/bioinformatics/btt156. Epub 2013 Apr 5.


Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE.

Névéol A, Wilbur WJ, Lu Z.

Database (Oxford). 2012 Jun 8;2012:bas026. doi: 10.1093/database/bas026. Print 2012.


Active learning-based information structure analysis of full scientific articles and two applications for biomedical literature review.

Guo Y, Silins I, Stenius U, Korhonen A.

Bioinformatics. 2013 Jun 1;29(11):1440-7. doi: 10.1093/bioinformatics/btt163. Epub 2013 Apr 5.


Searching the MEDLINE literature database through PubMed: a short guide.

Motschall E, Falck-Ytter Y.

Onkologie. 2005 Oct;28(10):517-22. Epub 2005 Aug 19. Review.


MEDRank: using graph-based concept ranking to index biomedical texts.

Herskovic JR, Cohen T, Subramanian D, Iyengar MS, Smith JW, Bernstam EV.

Int J Med Inform. 2011 Jun;80(6):431-41. doi: 10.1016/j.ijmedinf.2011.02.008. Epub 2011 Mar 25.


TaggerOne: joint named entity recognition and normalization with semi-Markov Models.

Leaman R, Lu Z.

Bioinformatics. 2016 Sep 15;32(18):2839-46. doi: 10.1093/bioinformatics/btw343. Epub 2016 Jun 9.


Screening nonrandomized studies for medical systematic reviews: a comparative study of classifiers.

Bekhuis T, Demner-Fushman D.

Artif Intell Med. 2012 Jul;55(3):197-207. doi: 10.1016/j.artmed.2012.05.002. Epub 2012 Jun 5.


Automatic discourse connective detection in biomedical text.

Ramesh BP, Prasad R, Miller T, Harrington B, Yu H.

J Am Med Inform Assoc. 2012 Sep-Oct;19(5):800-8. doi: 10.1136/amiajnl-2011-000775. Epub 2012 Jun 28.


An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition.

Tsatsaronis G, Balikas G, Malakasiotis P, Partalas I, Zschunke M, Alvers MR, Weissenborn D, Krithara A, Petridis S, Polychronopoulos D, Almirantis Y, Pavlopoulos J, Baskiotis N, Gallinari P, Artiéres T, Ngomo AC, Heino N, Gaussier E, Barrio-Alvers L, Schroeder M, Androutsopoulos I, Paliouras G.

BMC Bioinformatics. 2015 Apr 30;16:138. doi: 10.1186/s12859-015-0564-6.


Parsing citations in biomedical articles using conditional random fields.

Zhang Q, Cao YG, Yu H.

Comput Biol Med. 2011 Apr;41(4):190-4. doi: 10.1016/j.compbiomed.2011.02.005. Epub 2011 Mar 17.

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