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Items: 1 to 20 of 130

1.

Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula.

Branca A, Paape TD, Zhou P, Briskine R, Farmer AD, Mudge J, Bharti AK, Woodward JE, May GD, Gentzbittel L, Ben C, Denny R, Sadowsky MJ, Ronfort J, Bataillon T, Young ND, Tiffin P.

Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):E864-70. doi: 10.1073/pnas.1104032108. Epub 2011 Sep 26.

2.

Population genomic analysis of Tunisian Medicago truncatula reveals candidates for local adaptation.

Friesen ML, Cordeiro MA, Penmetsa RV, Badri M, Huguet T, Aouani ME, Cook DR, Nuzhdin SV.

Plant J. 2010 Aug;63(4):623-35. doi: 10.1111/j.1365-313X.2010.04267.x.

3.

Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula.

Stanton-Geddes J, Paape T, Epstein B, Briskine R, Yoder J, Mudge J, Bharti AK, Farmer AD, Zhou P, Denny R, May GD, Erlandson S, Yakub M, Sugawara M, Sadowsky MJ, Young ND, Tiffin P.

PLoS One. 2013 May 31;8(5):e65688. doi: 10.1371/journal.pone.0065688. Print 2013.

4.

Molecular adaptation in flowering and symbiotic recognition pathways: insights from patterns of polymorphism in the legume Medicago truncatula.

De Mita S, Chantret N, Loridon K, Ronfort J, Bataillon T.

BMC Evol Biol. 2011 Aug 1;11:229. doi: 10.1186/1471-2148-11-229.

5.

Single-nucleotide polymorphism discovery and diversity in the model legume Medicago truncatula.

Loridon K, Burgarella C, Chantret N, Martins F, Gouzy J, Prospéri JM, Ronfort J.

Mol Ecol Resour. 2013 Jan;13(1):84-95. doi: 10.1111/1755-0998.12021. Epub 2012 Sep 27.

PMID:
23017123
6.

Patterns of divergence of a large family of nodule cysteine-rich peptides in accessions of Medicago truncatula.

Nallu S, Silverstein KA, Zhou P, Young ND, Vandenbosch KA.

Plant J. 2014 May;78(4):697-705. doi: 10.1111/tpj.12506. Epub 2014 Apr 23.

8.

The Medicago genome provides insight into the evolution of rhizobial symbioses.

Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, Cheung F, De Mita S, Krishnakumar V, Gundlach H, Zhou S, Mudge J, Bharti AK, Murray JD, Naoumkina MA, Rosen B, Silverstein KA, Tang H, Rombauts S, Zhao PX, Zhou P, Barbe V, Bardou P, Bechner M, Bellec A, Berger A, Bergès H, Bidwell S, Bisseling T, Choisne N, Couloux A, Denny R, Deshpande S, Dai X, Doyle JJ, Dudez AM, Farmer AD, Fouteau S, Franken C, Gibelin C, Gish J, Goldstein S, González AJ, Green PJ, Hallab A, Hartog M, Hua A, Humphray SJ, Jeong DH, Jing Y, Jöcker A, Kenton SM, Kim DJ, Klee K, Lai H, Lang C, Lin S, Macmil SL, Magdelenat G, Matthews L, McCorrison J, Monaghan EL, Mun JH, Najar FZ, Nicholson C, Noirot C, O'Bleness M, Paule CR, Poulain J, Prion F, Qin B, Qu C, Retzel EF, Riddle C, Sallet E, Samain S, Samson N, Sanders I, Saurat O, Scarpelli C, Schiex T, Segurens B, Severin AJ, Sherrier DJ, Shi R, Sims S, Singer SR, Sinharoy S, Sterck L, Viollet A, Wang BB, Wang K, Wang M, Wang X, Warfsmann J, Weissenbach J, White DD, White JD, Wiley GB, Wincker P, Xing Y, Yang L, Yao Z, Ying F, Zhai J, Zhou L, Zuber A, Dénarié J, Dixon RA, May GD, Schwartz DC, Rogers J, Quétier F, Town CD, Roe BA.

Nature. 2011 Nov 16;480(7378):520-4. doi: 10.1038/nature10625.

9.

Fine-scale population recombination rates, hotspots, and correlates of recombination in the Medicago truncatula genome.

Paape T, Zhou P, Branca A, Briskine R, Young N, Tiffin P.

Genome Biol Evol. 2012;4(5):726-37. doi: 10.1093/gbe/evs046. Epub 2012 May 3.

10.

Selection, genome-wide fitness effects and evolutionary rates in the model legume Medicago truncatula.

Paape T, Bataillon T, Zhou P, J Y Kono T, Briskine R, Young ND, Tiffin P.

Mol Ecol. 2013 Jul;22(13):3525-38. doi: 10.1111/mec.12329. Epub 2013 Jun 15.

PMID:
23773281
11.

Similarity in recombination rate and linkage disequilibrium at CYP2C and CYP2D cytochrome P450 gene regions among Europeans indicates signs of selection and no advantage of using tagSNPs in population isolates.

Pimenoff VN, Laval G, Comas D, Palo JU, Gut I, Cann H, Excoffier L, Sajantila A.

Pharmacogenet Genomics. 2012 Dec;22(12):846-57. doi: 10.1097/FPC.0b013e32835a3a6d.

PMID:
23089684
12.

High-density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches.

Bonhomme M, André O, Badis Y, Ronfort J, Burgarella C, Chantret N, Prosperi JM, Briskine R, Mudge J, Debéllé F, Navier H, Miteul H, Hajri A, Baranger A, Tiffin P, Dumas B, Pilet-Nayel ML, Young ND, Jacquet C.

New Phytol. 2014 Mar;201(4):1328-42. doi: 10.1111/nph.12611. Epub 2013 Nov 28.

13.

Genome-wide association of drought-related and biomass traits with HapMap SNPs in Medicago truncatula.

Kang Y, Sakiroglu M, Krom N, Stanton-Geddes J, Wang M, Lee YC, Young ND, Udvardi M.

Plant Cell Environ. 2015 Oct;38(10):1997-2011. doi: 10.1111/pce.12520. Epub 2015 Apr 17.

PMID:
25707512
14.

Genomic signature of adaptation to climate in Medicago truncatula.

Yoder JB, Stanton-Geddes J, Zhou P, Briskine R, Young ND, Tiffin P.

Genetics. 2014 Apr;196(4):1263-75. doi: 10.1534/genetics.113.159319. Epub 2014 Jan 17.

15.

Evidence for a large-scale population structure of Arabidopsis thaliana from genome-wide single nucleotide polymorphism markers.

Schmid KJ, Törjék O, Meyer R, Schmuths H, Hoffmann MH, Altmann T.

Theor Appl Genet. 2006 Apr;112(6):1104-14. Epub 2006 Feb 2.

PMID:
16453134
16.

Genome-enabled insights into legume biology.

Young ND, Bharti AK.

Annu Rev Plant Biol. 2012;63:283-305. doi: 10.1146/annurev-arplant-042110-103754. Epub 2012 Jan 30. Review.

PMID:
22404476
17.

The model legume genomes.

Cannon SB.

Methods Mol Biol. 2013;1069:1-14. doi: 10.1007/978-1-62703-613-9_1. Review.

PMID:
23996304
18.

Characterisation of the legume SERK-NIK gene superfamily including splice variants: implications for development and defence.

Nolan KE, Kurdyukov S, Rose RJ.

BMC Plant Biol. 2011 Mar 9;11:44. doi: 10.1186/1471-2229-11-44.

19.
20.

Genomic Signature of Selective Sweeps Illuminates Adaptation of Medicago truncatula to Root-Associated Microorganisms.

Bonhomme M, Boitard S, San Clemente H, Dumas B, Young N, Jacquet C.

Mol Biol Evol. 2015 Aug;32(8):2097-110. doi: 10.1093/molbev/msv092. Epub 2015 Apr 21.

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