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Items: 1 to 20 of 94

1.

CAGE (cap analysis of gene expression): a protocol for the detection of promoter and transcriptional networks.

Takahashi H, Kato S, Murata M, Carninci P.

Methods Mol Biol. 2012;786:181-200. doi: 10.1007/978-1-61779-292-2_11.

2.

[Cap analysis gene expression: CAGE].

Nakamura M, Carninci P.

Tanpakushitsu Kakusan Koso. 2004 Dec;49(17 Suppl):2688-93. Review. Japanese. No abstract available.

PMID:
15669240
3.

5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing.

Takahashi H, Lassmann T, Murata M, Carninci P.

Nat Protoc. 2012 Feb 23;7(3):542-61. doi: 10.1038/nprot.2012.005.

4.

CAGE: cap analysis of gene expression.

Kodzius R, Kojima M, Nishiyori H, Nakamura M, Fukuda S, Tagami M, Sasaki D, Imamura K, Kai C, Harbers M, Hayashizaki Y, Carninci P.

Nat Methods. 2006 Mar;3(3):211-22. No abstract available.

PMID:
16489339
5.

A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.

Faulkner GJ, Forrest AR, Chalk AM, Schroder K, Hayashizaki Y, Carninci P, Hume DA, Grimmond SM.

Genomics. 2008 Mar;91(3):281-8. doi: 10.1016/j.ygeno.2007.11.003.

6.

Unamplified cap analysis of gene expression on a single-molecule sequencer.

Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya N, Daub CO, Carninci P, Forrest AR, Hayashizaki Y.

Genome Res. 2011 Jul;21(7):1150-9. doi: 10.1101/gr.115469.110. Epub 2011 May 19.

7.

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.

Shiraki T, Kondo S, Katayama S, Waki K, Kasukawa T, Kawaji H, Kodzius R, Watahiki A, Nakamura M, Arakawa T, Fukuda S, Sasaki D, Podhajska A, Harbers M, Kawai J, Carninci P, Hayashizaki Y.

Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15776-81. Epub 2003 Dec 8.

8.

Deep cap analysis gene expression (CAGE): genome-wide identification of promoters, quantification of their expression, and network inference.

de Hoon M, Hayashizaki Y.

Biotechniques. 2008 Apr;44(5):627-8, 630, 632. doi: 10.2144/000112802. Review.

9.

[Mapping of transcriptional regulation network using microarray data set].

Iida J, Kanamori M.

Tanpakushitsu Kakusan Koso. 2004 Dec;49(17 Suppl):2717-22. Review. Japanese. No abstract available.

PMID:
15669245
10.

Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs.

Affymetrix ENCODE Transcriptome Project; Cold Spring Harbor Laboratory ENCODE Transcriptome Project.

Nature. 2009 Feb 19;457(7232):1028-32. doi: 10.1038/nature07759. Epub 2009 Jan 25.

11.

ENCODE tiling array analysis identifies differentially expressed annotated and novel 5' capped RNAs in hepatitis C infected liver.

Folkers ME, Delker DA, Maxwell CI, Nelson CA, Schwartz JJ, Nix DA, Hagedorn CH.

PLoS One. 2011 Feb 16;6(2):e14697. doi: 10.1371/journal.pone.0014697.

12.

Diverse transcriptional initiation revealed by fine, large-scale mapping of mRNA start sites.

Suzuki Y, Taira H, Tsunoda T, Mizushima-Sugano J, Sese J, Hata H, Ota T, Isogai T, Tanaka T, Morishita S, Okubo K, Sakaki Y, Nakamura Y, Suyama A, Sugano S.

EMBO Rep. 2001 May;2(5):388-93.

13.

[Tissue-specificity of transcriptional regulation].

Suzuki M.

Tanpakushitsu Kakusan Koso. 2004 Dec;49(17 Suppl):2734-41. Review. Japanese. No abstract available.

PMID:
15669248
14.

Distribution of menin-occupied regions in chromatin specifies a broad role of menin in transcriptional regulation.

Agarwal SK, Impey S, McWeeney S, Scacheri PC, Collins FS, Goodman RH, Spiegel AM, Marx SJ.

Neoplasia. 2007 Feb;9(2):101-7.

15.

Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer.

Maeda N, Nishiyori H, Nakamura M, Kawazu C, Murata M, Sano H, Hayashida K, Fukuda S, Tagami M, Hasegawa A, Murakami K, Schroder K, Irvine K, Hume D, Hayashizaki Y, Carninci P, Suzuki H.

Biotechniques. 2008 Jul;45(1):95-7. doi: 10.2144/000112814.

16.

[Determination of transcription start sites: CAGE & GIS tag sequences].

Shinji K.

Tanpakushitsu Kakusan Koso. 2004 Dec;49(17 Suppl):2701-3. Review. Japanese. No abstract available.

PMID:
15669242
17.

Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia.

Carninci P, Waki K, Shiraki T, Konno H, Shibata K, Itoh M, Aizawa K, Arakawa T, Ishii Y, Sasaki D, Bono H, Kondo S, Sugahara Y, Saito R, Osato N, Fukuda S, Sato K, Watahiki A, Hirozane-Kishikawa T, Nakamura M, Shibata Y, Yasunishi A, Kikuchi N, Yoshiki A, Kusakabe M, Gustincich S, Beisel K, Pavan W, Aidinis V, Nakagawara A, Held WA, Iwata H, Kono T, Nakauchi H, Lyons P, Wells C, Hume DA, Fagiolini M, Hensch TK, Brinkmeier M, Camper S, Hirota J, Mombaerts P, Muramatsu M, Okazaki Y, Kawai J, Hayashizaki Y.

Genome Res. 2003 Jun;13(6B):1273-89.

18.

Influence of a cap site element on tissue-restricted expression of the glycoprotein hormone alpha-subunit gene.

Cox GS, Xiong W.

Biochem Biophys Res Commun. 1999 Jul 14;260(3):752-9.

PMID:
10403838
19.

Detecting expressed genes using CAGE.

Murata M, Nishiyori-Sueki H, Kojima-Ishiyama M, Carninci P, Hayashizaki Y, Itoh M.

Methods Mol Biol. 2014;1164:67-85. doi: 10.1007/978-1-4939-0805-9_7.

PMID:
24927836
20.

Promoter elements and transcriptional control of the chicken tropomyosin gene [corrected].

Toutant M, Gauthier-Rouviere C, Fiszman MY, Lemonnier M.

Nucleic Acids Res. 1994 May 25;22(10):1838-45. Erratum in: Nucleic Acids Res 1995 Feb 11;23(3):540.

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