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Items: 1 to 20 of 87

1.

Genome-wide expression assay comparison across frozen and fixed postmortem brain tissue samples.

Chow ML, Li HR, Winn ME, April C, Barnes CC, Wynshaw-Boris A, Fan JB, Fu XD, Courchesne E, Schork NJ.

BMC Genomics. 2011 Sep 10;12:449. doi: 10.1186/1471-2164-12-449.

2.

Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples.

April C, Klotzle B, Royce T, Wickham-Garcia E, Boyaniwsky T, Izzo J, Cox D, Jones W, Rubio R, Holton K, Matulonis U, Quackenbush J, Fan JB.

PLoS One. 2009 Dec 3;4(12):e8162. doi: 10.1371/journal.pone.0008162.

3.

Gene expression profiling of formalin-fixed, paraffin-embedded familial breast tumours using the whole genome-DASL assay.

Waddell N, Cocciardi S, Johnson J, Healey S, Marsh A, Riley J, da Silva L, Vargas AC, Reid L; kConFab Investigators, Simpson PT, Lakhani SR, Chenevix-Trench G.

J Pathol. 2010 Aug;221(4):452-61. doi: 10.1002/path.2728.

PMID:
20593485
4.

Illumina whole-genome complementary DNA-mediated annealing, selection, extension and ligation platform: assessing its performance in formalin-fixed, paraffin-embedded samples and identifying invasion pattern-related genes in oral squamous cell carcinoma.

Loudig O, Brandwein-Gensler M, Kim RS, Lin J, Isayeva T, Liu C, Segall JE, Kenny PA, Prystowsky MB.

Hum Pathol. 2011 Dec;42(12):1911-22. doi: 10.1016/j.humpath.2011.02.011. Epub 2011 Jun 17.

PMID:
21683979
5.

Gene expression profiling of human whole blood samples with the Illumina WG-DASL assay.

Winn ME, Shaw M, April C, Klotzle B, Fan JB, Murray SS, Schork NJ.

BMC Genomics. 2011 Aug 15;12:412. doi: 10.1186/1471-2164-12-412.

6.

Quantitative expression profiling of highly degraded RNA from formalin-fixed, paraffin-embedded breast tumor biopsies by oligonucleotide microarrays.

Ravo M, Mutarelli M, Ferraro L, Grober OM, Paris O, Tarallo R, Vigilante A, Cimino D, De Bortoli M, Nola E, Cicatiello L, Weisz A.

Lab Invest. 2008 Apr;88(4):430-40. doi: 10.1038/labinvest.2008.11. Epub 2008 Feb 25.

7.

Gene expression profiles from formalin fixed paraffin embedded breast cancer tissue are largely comparable to fresh frozen matched tissue.

Mittempergher L, de Ronde JJ, Nieuwland M, Kerkhoven RM, Simon I, Rutgers EJ, Wessels LF, Van't Veer LJ.

PLoS One. 2011 Feb 11;6(2):e17163. doi: 10.1371/journal.pone.0017163.

8.

Quantitative gene expression profiling in formalin-fixed, paraffin-embedded tissues using universal bead arrays.

Bibikova M, Talantov D, Chudin E, Yeakley JM, Chen J, Doucet D, Wickham E, Atkins D, Barker D, Chee M, Wang Y, Fan JB.

Am J Pathol. 2004 Nov;165(5):1799-807.

9.

Optimization of RNA extraction from FFPE tissues for expression profiling in the DASL assay.

Abramovitz M, Ordanic-Kodani M, Wang Y, Li Z, Catzavelos C, Bouzyk M, Sledge GW Jr, Moreno CS, Leyland-Jones B.

Biotechniques. 2008 Mar;44(3):417-23. doi: 10.2144/000112703.

10.

Gene expression profiling in formalin-fixed, paraffin-embedded tissues using the whole-genome DASL assay.

April CS, Fan JB.

Methods Mol Biol. 2011;784:77-98. doi: 10.1007/978-1-61779-289-2_6.

PMID:
21898214
11.

Clinical relevance of DNA microarray analyses using archival formalin-fixed paraffin-embedded breast cancer specimens.

Sadi AM, Wang DY, Youngson BJ, Miller N, Boerner S, Done SJ, Leong WL.

BMC Cancer. 2011 Jun 16;11:253:1-13. doi: 10.1186/1471-2407-11-25.

12.

Molecular restoration of archived transcriptional profiles by complementary-template reverse-transcription (CT-RT).

Loudig O, Milova E, Brandwein-Gensler M, Massimi A, Belbin TJ, Childs G, Singer RH, Rohan T, Prystowsky MB.

Nucleic Acids Res. 2007;35(15):e94. Epub 2007 Jul 17.

13.

Molecular characterisation of formalin-fixed paraffin-embedded (FFPE) breast tumour specimens using a custom 512-gene breast cancer bead array-based platform.

Abramovitz M, Barwick BG, Willis S, Young B, Catzavelos C, Li Z, Kodani M, Tang W, Bouzyk M, Moreno CS, Leyland-Jones B.

Br J Cancer. 2011 Nov 8;105(10):1574-81. doi: 10.1038/bjc.2011.355.

14.

Analyses and interpretation of whole-genome gene expression from formalin-fixed paraffin-embedded tissue: an illustration with breast cancer tissues.

Kibriya MG, Jasmine F, Roy S, Paul-Brutus RM, Argos M, Ahsan H.

BMC Genomics. 2010 Nov 8;11:622. doi: 10.1186/1471-2164-11-622.

15.

Preliminary comparison of quantity, quality, and microarray performance of RNA extracted from formalin-fixed, paraffin-embedded, and unfixed frozen tissue samples.

Scicchitano MS, Dalmas DA, Bertiaux MA, Anderson SM, Turner LR, Thomas RA, Mirable R, Boyce RW.

J Histochem Cytochem. 2006 Nov;54(11):1229-37. Epub 2006 Jul 24.

PMID:
16864893
16.

An array-based analysis of microRNA expression comparing matched frozen and formalin-fixed paraffin-embedded human tissue samples.

Zhang X, Chen J, Radcliffe T, Lebrun DP, Tron VA, Feilotter H.

J Mol Diagn. 2008 Nov;10(6):513-9. doi: 10.2353/jmoldx.2008.080077. Epub 2008 Oct 2.

17.

Molecular markers associated with nonepithelial ovarian cancer in formalin-fixed, paraffin-embedded specimens by genome wide expression profiling.

Vui-Kee K, Mohd Dali AZ, Mohamed Rose I, Ghazali R, Jamal R, Mokhtar NM.

Kaohsiung J Med Sci. 2012 May;28(5):243-50. doi: 10.1016/j.kjms.2011.11.007. Epub 2012 Apr 6.

18.

Quantitative expression profiling of RNA from formalin-fixed, paraffin-embedded tissues using randomly assembled bead arrays.

Bibikova M, Yeakley JM, Wang-Rodriguez J, Fan JB.

Methods Mol Biol. 2008;439:159-77. doi: 10.1007/978-1-59745-188-8_11.

PMID:
18370102
19.

Methods comparison for high-resolution transcriptional analysis of archival material on Affymetrix Plus 2.0 and Exon 1.0 microarrays.

Linton K, Hey Y, Dibben S, Miller C, Freemont A, Radford J, Pepper S.

Biotechniques. 2009 Jul;47(1):587-96. doi: 10.2144/000113169.

20.

Comparison of frozen and RNALater solid tissue storage methods for use in RNA expression microarrays.

Mutter GL, Zahrieh D, Liu C, Neuberg D, Finkelstein D, Baker HE, Warrington JA.

BMC Genomics. 2004 Nov 10;5:88.

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