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Items: 1 to 20 of 97

1.

A comprehensively molecular haplotype-resolved genome of a European individual.

Suk EK, McEwen GK, Duitama J, Nowick K, Schulz S, Palczewski S, Schreiber S, Holloway DT, McLaughlin S, Peckham H, Lee C, Huebsch T, Hoehe MR.

Genome Res. 2011 Oct;21(10):1672-85. doi: 10.1101/gr.125047.111. Epub 2011 Aug 3.

2.

A Fosmid Pool-Based Next Generation Sequencing Approach to Haplotype-Resolve Whole Genomes.

Suk EK, Schulz S, Mentrup B, Huebsch T, Duitama J, Hoehe MR.

Methods Mol Biol. 2017;1551:223-269. doi: 10.1007/978-1-4939-6750-6_13.

PMID:
28138850
3.

Multiple haplotype-resolved genomes reveal population patterns of gene and protein diplotypes.

Hoehe MR, Church GM, Lehrach H, Kroslak T, Palczewski S, Nowick K, Schulz S, Suk EK, Huebsch T.

Nat Commun. 2014 Nov 26;5:5569. doi: 10.1038/ncomms6569.

4.

Complete genome phasing of family quartet by combination of genetic, physical and population-based phasing analysis.

Lajugie J, Mukhopadhyay R, Schizas M, Lailler N, Fourel N, Bouhassira EE.

PLoS One. 2013 May 31;8(5):e64571. doi: 10.1371/journal.pone.0064571. Print 2013.

5.

Haplotype sorting using human fosmid clone end-sequence pairs.

Kidd JM, Cheng Z, Graves T, Fulton B, Wilson RK, Eichler EE.

Genome Res. 2008 Dec;18(12):2016-23. doi: 10.1101/gr.081786.108. Epub 2008 Oct 3.

6.

De novo assembly of a haplotype-resolved human genome.

Cao H, Wu H, Luo R, Huang S, Sun Y, Tong X, Xie Y, Liu B, Yang H, Zheng H, Li J, Li B, Wang Y, Yang F, Sun P, Liu S, Gao P, Huang H, Sun J, Chen D, He G, Huang W, Huang Z, Li Y, Tellier LC, Liu X, Feng Q, Xu X, Zhang X, Bolund L, Krogh A, Kristiansen K, Drmanac R, Drmanac S, Nielsen R, Li S, Wang J, Yang H, Li Y, Wong GK, Wang J.

Nat Biotechnol. 2015 Jun;33(6):617-22. doi: 10.1038/nbt.3200. Epub 2015 May 25.

PMID:
26006006
7.

Whole-genome haplotyping by dilution, amplification, and sequencing.

Kaper F, Swamy S, Klotzle B, Munchel S, Cottrell J, Bibikova M, Chuang HY, Kruglyak S, Ronaghi M, Eberle MA, Fan JB.

Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5552-7. doi: 10.1073/pnas.1218696110. Epub 2013 Mar 18.

8.

Fosmid-based whole genome haplotyping of a HapMap trio child: evaluation of Single Individual Haplotyping techniques.

Duitama J, McEwen GK, Huebsch T, Palczewski S, Schulz S, Verstrepen K, Suk EK, Hoehe MR.

Nucleic Acids Res. 2012 Mar;40(5):2041-53. doi: 10.1093/nar/gkr1042. Epub 2011 Nov 18.

9.

Haplotype-resolved genome sequencing of a Gujarati Indian individual.

Kitzman JO, Mackenzie AP, Adey A, Hiatt JB, Patwardhan RP, Sudmant PH, Ng SB, Alkan C, Qiu R, Eichler EE, Shendure J.

Nat Biotechnol. 2011 Jan;29(1):59-63. doi: 10.1038/nbt.1740. Epub 2010 Dec 19. Erratum in: Nat Biotechnol. 2011 May;29(5):459.

10.

Determination of haplotypes at structurally complex regions using emulsion haplotype fusion PCR.

Tyson J, Armour JA.

BMC Genomics. 2012 Dec 11;13:693. doi: 10.1186/1471-2164-13-693.

11.

Genome analysis of the domestic dog (Korean Jindo) by massively parallel sequencing.

Kim RN, Kim DS, Choi SH, Yoon BH, Kang A, Nam SH, Kim DW, Kim JJ, Ha JH, Toyoda A, Fujiyama A, Kim A, Kim MY, Park KH, Lee KS, Park HS.

DNA Res. 2012 Jun;19(3):275-87. doi: 10.1093/dnares/dss011. Epub 2012 Apr 3.

12.

Sequencing of isolated sperm cells for direct haplotyping of a human genome.

Kirkness EF, Grindberg RV, Yee-Greenbaum J, Marshall CR, Scherer SW, Lasken RS, Venter JC.

Genome Res. 2013 May;23(5):826-32. doi: 10.1101/gr.144600.112. Epub 2013 Jan 2.

13.

Whole-genome sequencing and genetic variant analysis of a Quarter Horse mare.

Doan R, Cohen ND, Sawyer J, Ghaffari N, Johnson CD, Dindot SV.

BMC Genomics. 2012 Feb 17;13:78. doi: 10.1186/1471-2164-13-78.

14.

Comprehensive characterization of human genome variation by high coverage whole-genome sequencing of forty four Caucasians.

Shen H, Li J, Zhang J, Xu C, Jiang Y, Wu Z, Zhao F, Liao L, Chen J, Lin Y, Tian Q, Papasian CJ, Deng HW.

PLoS One. 2013;8(4):e59494. doi: 10.1371/journal.pone.0059494. Epub 2013 Apr 5.

15.

Human inter-individual DNA sequence variation in candidate genes, drug targets, the importance of haplotypes and pharmacogenomics.

Hoehe MR, Timmermann B, Lehrach H.

Curr Pharm Biotechnol. 2003 Dec;4(6):351-78. Review.

PMID:
14683431
17.

Haplotype-resolved genome sequencing: experimental methods and applications.

Snyder MW, Adey A, Kitzman JO, Shendure J.

Nat Rev Genet. 2015 Jun;16(6):344-58. doi: 10.1038/nrg3903. Epub 2015 May 7. Review.

PMID:
25948246
18.

Modeling Human Population Separation History Using Physically Phased Genomes.

Song S, Sliwerska E, Emery S, Kidd JM.

Genetics. 2017 Jan;205(1):385-395. doi: 10.1534/genetics.116.192963. Epub 2016 Nov 9.

19.

Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing.

Amini S, Pushkarev D, Christiansen L, Kostem E, Royce T, Turk C, Pignatelli N, Adey A, Kitzman JO, Vijayan K, Ronaghi M, Shendure J, Gunderson KL, Steemers FJ.

Nat Genet. 2014 Dec;46(12):1343-9. doi: 10.1038/ng.3119. Epub 2014 Oct 19.

20.

HapTree: a novel Bayesian framework for single individual polyplotyping using NGS data.

Berger E, Yorukoglu D, Peng J, Berger B.

PLoS Comput Biol. 2014 Mar 27;10(3):e1003502. doi: 10.1371/journal.pcbi.1003502. eCollection 2014 Mar.

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