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Items: 1 to 20 of 52

1.

The orphan disease networks.

Zhang M, Zhu C, Jacomy A, Lu LJ, Jegga AG.

Am J Hum Genet. 2011 Jun 10;88(6):755-66. doi: 10.1016/j.ajhg.2011.05.006.

2.

A vertex similarity-based framework to discover and rank orphan disease-related genes.

Zhu C, Kushwaha A, Berman K, Jegga AG.

BMC Syst Biol. 2012;6 Suppl 3:S8. doi: 10.1186/1752-0509-6-S3-S8.

3.

Prioritization of orphan disease-causing genes using topological feature and GO similarity between proteins in interaction networks.

Li M, Li Q, Ganegoda GU, Wang J, Wu F, Pan Y.

Sci China Life Sci. 2014 Nov;57(11):1064-71. doi: 10.1007/s11427-014-4747-6.

PMID:
25326068
4.

Studying tumorigenesis through network evolution and somatic mutational perturbations in the cancer interactome.

Cheng F, Jia P, Wang Q, Lin CC, Li WH, Zhao Z.

Mol Biol Evol. 2014 Aug;31(8):2156-69. doi: 10.1093/molbev/msu167.

5.

Global analysis of the human pathophenotypic similarity gene network merges disease module components.

Reyes-Palomares A, Rodríguez-López R, Ranea JA, Sánchez-Jiménez F, Medina MA.

PLoS One. 2013;8(2):e56653. doi: 10.1371/journal.pone.0056653. Erratum in: PLoS One. 2013;8(6). doi: 10.1371/annotation/03fb5f25-21c7-4dfb-9d74-00a22f160bd6. Print 2013.. Sánchez Jiménez, Francisca [corrected to Sánchez-Jiménez, Francisca].

6.

Genome-wide inferring gene-phenotype relationship by walking on the heterogeneous network.

Li Y, Patra JC.

Bioinformatics. 2010 May 1;26(9):1219-24. doi: 10.1093/bioinformatics/btq108.

PMID:
20215462
7.

Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli.

Babu M, Gagarinova A, Greenblatt J, Emili A.

Methods Mol Biol. 2011;765:125-53. doi: 10.1007/978-1-61779-197-0_9.

PMID:
21815091
8.

Network properties of human disease genes with pleiotropic effects.

Chavali S, Barrenas F, Kanduri K, Benson M.

BMC Syst Biol. 2010 Jun 4;4:78. doi: 10.1186/1752-0509-4-78.

9.

Predicting genetic interactions with random walks on biological networks.

Chipman KC, Singh AK.

BMC Bioinformatics. 2009 Jan 12;10:17. doi: 10.1186/1471-2105-10-17.

10.

Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli.

Babu M, Gagarinova A, Emili A.

Methods Mol Biol. 2011;781:99-126. doi: 10.1007/978-1-61779-276-2_7.

PMID:
21877280
11.

Inferring gene-phenotype associations via global protein complex network propagation.

Yang P, Li X, Wu M, Kwoh CK, Ng SK.

PLoS One. 2011;6(7):e21502. doi: 10.1371/journal.pone.0021502.

12.

Interactome networks and human disease.

Vidal M, Cusick ME, Barabási AL.

Cell. 2011 Mar 18;144(6):986-98. doi: 10.1016/j.cell.2011.02.016. Review.

13.

A pathway-based view of human diseases and disease relationships.

Li Y, Agarwal P.

PLoS One. 2009;4(2):e4346. doi: 10.1371/journal.pone.0004346.

14.

Genes2FANs: connecting genes through functional association networks.

Dannenfelser R, Clark NR, Ma'ayan A.

BMC Bioinformatics. 2012 Jul 2;13:156. doi: 10.1186/1471-2105-13-156.

15.

Network-based methods for human disease gene prediction.

Wang X, Gulbahce N, Yu H.

Brief Funct Genomics. 2011 Sep;10(5):280-93. doi: 10.1093/bfgp/elr024. Review.

PMID:
21764832
16.
17.

Finding directionality and gene-disease predictions in disease associations.

Garcia-Albornoz M, Nielsen J.

BMC Syst Biol. 2015 Jul 15;9:35. doi: 10.1186/s12918-015-0184-9.

18.

Common genetic variants and gene-expression changes associated with bipolar disorder are over-represented in brain signaling pathway genes.

Pedroso I, Lourdusamy A, Rietschel M, Nöthen MM, Cichon S, McGuffin P, Al-Chalabi A, Barnes MR, Breen G.

Biol Psychiatry. 2012 Aug 15;72(4):311-7. doi: 10.1016/j.biopsych.2011.12.031.

PMID:
22502986
19.

Edgotype: a fundamental link between genotype and phenotype.

Sahni N, Yi S, Zhong Q, Jailkhani N, Charloteaux B, Cusick ME, Vidal M.

Curr Opin Genet Dev. 2013 Dec;23(6):649-57. doi: 10.1016/j.gde.2013.11.002. Review.

20.

Functional Gene Networks: R/Bioc package to generate and analyse gene networks derived from functional enrichment and clustering.

Aibar S, Fontanillo C, Droste C, De Las Rivas J.

Bioinformatics. 2015 May 15;31(10):1686-8. doi: 10.1093/bioinformatics/btu864.

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