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Items: 1 to 20 of 91

1.

Did evolution select a nonrandom "alphabet" of amino acids?

Philip GK, Freeland SJ.

Astrobiology. 2011 Apr;11(3):235-40. doi: 10.1089/ast.2010.0567. Epub 2011 Mar 24.

PMID:
21434765
2.

A quantitative investigation of the chemical space surrounding amino acid alphabet formation.

Lu Y, Freeland SJ.

J Theor Biol. 2008 Jan 21;250(2):349-61. Epub 2007 Oct 12.

PMID:
18005995
4.

Extraordinarily adaptive properties of the genetically encoded amino acids.

Ilardo M, Meringer M, Freeland S, Rasulev B, Cleaves HJ 2nd.

Sci Rep. 2015 Mar 24;5:9414. doi: 10.1038/srep09414.

5.

What is the protein design alphabet?

Dokholyan NV.

Proteins. 2004 Mar 1;54(4):622-8.

PMID:
14997558
6.

Exploring the evolution of standard amino-acid alphabet: when genomics meets thermodynamics.

Zhang HY.

Biochem Biophys Res Commun. 2007 Aug 3;359(3):403-5. Epub 2007 May 25. Review.

PMID:
17543275
7.

High solubility of random-sequence proteins consisting of five kinds of primitive amino acids.

Doi N, Kakukawa K, Oishi Y, Yanagawa H.

Protein Eng Des Sel. 2005 Jun;18(6):279-84. Epub 2005 May 31.

PMID:
15928003
8.
9.

Comparative characterization of random-sequence proteins consisting of 5, 12, and 20 kinds of amino acids.

Tanaka J, Doi N, Takashima H, Yanagawa H.

Protein Sci. 2010 Apr;19(4):786-95. doi: 10.1002/pro.358.

10.

Self-instructed condensation of amino acids into polymers.

Dose K.

Adv Space Res. 1984;4(12):135-42.

PMID:
11537767
11.

Beyond terrestrial biology: charting the chemical universe of α-amino acid structures.

Meringer M, Cleaves HJ 2nd, Freeland SJ.

J Chem Inf Model. 2013 Nov 25;53(11):2851-62. doi: 10.1021/ci400209n. Epub 2013 Nov 11.

PMID:
24152173
12.

Distance-dependent classification of amino acids by information theory.

Pape S, Hoffgaard F, Hamacher K.

Proteins. 2010 Aug 1;78(10):2322-8. doi: 10.1002/prot.22744.

PMID:
20544967
13.

Stability of the genetic code and optimal parameters of amino acids.

Chechetkin VR, Lobzin VV.

J Theor Biol. 2011 Jan 21;269(1):57-63. doi: 10.1016/j.jtbi.2010.10.015. Epub 2010 Oct 16.

PMID:
20955716
14.

Folding alphabets.

Chan HS.

Nat Struct Biol. 1999 Nov;6(11):994-6.

PMID:
10542084
15.
16.

Digital coding of amino acids based on hydrophobic index.

Xiao X, Chou KC.

Protein Pept Lett. 2007;14(9):871-5.

PMID:
18045228
17.

A research proposal on the origin of life.

de Duve C.

Orig Life Evol Biosph. 2003 Dec;33(6):559-74.

PMID:
14601926
18.

An active enzyme constructed from a 9-amino acid alphabet.

Walter KU, Vamvaca K, Hilvert D.

J Biol Chem. 2005 Nov 11;280(45):37742-6. Epub 2005 Sep 6.

19.

Simplified protein design biased for prebiotic amino acids yields a foldable, halophilic protein.

Longo LM, Lee J, Blaber M.

Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):2135-9. doi: 10.1073/pnas.1219530110. Epub 2013 Jan 22.

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