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Items: 1 to 20 of 105

1.

The representation of heart development in the gene ontology.

Khodiyar VK, Hill DP, Howe D, Berardini TZ, Tweedie S, Talmud PJ, Breckenridge R, Bhattarcharya S, Riley P, Scambler P, Lovering RC.

Dev Biol. 2011 Jun 1;354(1):9-17. doi: 10.1016/j.ydbio.2011.03.011. Epub 2011 Mar 17.

2.

The Gene Ontology in 2010: extensions and refinements.

Gene Ontology Consortium.

Nucleic Acids Res. 2010 Jan;38(Database issue):D331-5. doi: 10.1093/nar/gkp1018. Epub 2009 Nov 17.

3.

Representing ontogeny through ontology: a developmental biologist's guide to the gene ontology.

Hill DP, Berardini TZ, Howe DG, Van Auken KM.

Mol Reprod Dev. 2010 Apr;77(4):314-29. doi: 10.1002/mrd.21130. Review.

4.

Extension and integration of the gene ontology (GO): combining GO vocabularies with external vocabularies.

Hill DP, Blake JA, Richardson JE, Ringwald M.

Genome Res. 2002 Dec;12(12):1982-91.

5.

The Gene Ontology (GO) project: structured vocabularies for molecular biology and their application to genome and expression analysis.

Blake JA, Harris MA.

Curr Protoc Bioinformatics. 2008 Sep;Chapter 7:Unit 7.2. doi: 10.1002/0471250953.bi0702s23.

PMID:
18819077
6.

Computational analysis of microRNA function in heart development.

Liu G, Ding M, Chen J, Huang J, Wang H, Jing Q, Shen B.

Acta Biochim Biophys Sin (Shanghai). 2010 Sep;42(9):662-70. doi: 10.1093/abbs/gmq072. Epub 2010 Aug 17.

PMID:
20716610
7.

Improvements to cardiovascular gene ontology.

Lovering RC, Dimmer EC, Talmud PJ.

Atherosclerosis. 2009 Jul;205(1):9-14. doi: 10.1016/j.atherosclerosis.2008.10.014. Epub 2008 Nov 1. Review.

8.

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.

Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D262-6.

9.

Methods for gene ontology annotation.

Dimmer E, Berardini TZ, Barrell D, Camon E.

Methods Mol Biol. 2007;406:495-520.

PMID:
18287709
10.

Muscle Research and Gene Ontology: New standards for improved data integration.

Feltrin E, Campanaro S, Diehl AD, Ehler E, Faulkner G, Fordham J, Gardin C, Harris M, Hill D, Knoell R, Laveder P, Mittempergher L, Nori A, Reggiani C, Sorrentino V, Volpe P, Zara I, Valle G, Deegan J.

BMC Med Genomics. 2009 Jan 29;2:6. doi: 10.1186/1755-8794-2-6.

11.

Gene Ontology annotations: what they mean and where they come from.

Hill DP, Smith B, McAndrews-Hill MS, Blake JA.

BMC Bioinformatics. 2008 Apr 29;9 Suppl 5:S2. doi: 10.1186/1471-2105-9-S5-S2.

12.

GO-Elite: a flexible solution for pathway and ontology over-representation.

Zambon AC, Gaj S, Ho I, Hanspers K, Vranizan K, Evelo CT, Conklin BR, Pico AR, Salomonis N.

Bioinformatics. 2012 Aug 15;28(16):2209-10. doi: 10.1093/bioinformatics/bts366. Epub 2012 Jun 27.

13.

Gene Ontology annotations and resources.

Gene Ontology Consortium, Blake JA, Dolan M, Drabkin H, Hill DP, Li N, Sitnikov D, Bridges S, Burgess S, Buza T, McCarthy F, Peddinti D, Pillai L, Carbon S, Dietze H, Ireland A, Lewis SE, Mungall CJ, Gaudet P, Chrisholm RL, Fey P, Kibbe WA, Basu S, Siegele DA, McIntosh BK, Renfro DP, Zweifel AE, Hu JC, Brown NH, Tweedie S, Alam-Faruque Y, Apweiler R, Auchinchloss A, Axelsen K, Bely B, Blatter M-, Bonilla C, Bouguerleret L, Boutet E, Breuza L, Bridge A, Chan WM, Chavali G, Coudert E, Dimmer E, Estreicher A, Famiglietti L, Feuermann M, Gos A, Gruaz-Gumowski N, Hieta R, Hinz C, Hulo C, Huntley R, James J, Jungo F, Keller G, Laiho K, Legge D, Lemercier P, Lieberherr D, Magrane M, Martin MJ, Masson P, Mutowo-Muellenet P, O'Donovan C, Pedruzzi I, Pichler K, Poggioli D, Porras Millán P, Poux S, Rivoire C, Roechert B, Sawford T, Schneider M, Stutz A, Sundaram S, Tognolli M, Xenarios I, Foulgar R, Lomax J, Roncaglia P, Khodiyar VK, Lovering RC, Talmud PJ, Chibucos M, Giglio MG, Chang H-, Hunter S, McAnulla C, Mitchell A, Sangrador A, Stephan R, Harris MA, Oliver SG, Rutherford K, Wood V, Bahler J, Lock A, Kersey PJ, McDowall DM, Staines DM, Dwinell M, Shimoyama M, Laulederkind S, Hayman T, Wang S-, Petri V, Lowry T, D'Eustachio P, Matthews L, Balakrishnan R, Binkley G, Cherry JM, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hitz BC, Hong EL, Karra K, Miyasato SR, Nash RS, Park J, Skrzypek MS, Weng S, Wong ED, Berardini TZ, Huala E, Mi H, Thomas PD, Chan J, Kishore R, Sternberg P, Van Auken K, Howe D, Westerfield M.

Nucleic Acids Res. 2013 Jan;41(Database issue):D530-5. doi: 10.1093/nar/gks1050. Epub 2012 Nov 17.

14.

Understanding how and why the Gene Ontology and its annotations evolve: the GO within UniProt.

Huntley RP, Sawford T, Martin MJ, O'Donovan C.

Gigascience. 2014 Mar 18;3(1):4. doi: 10.1186/2047-217X-3-4.

15.

CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.

Park J, Costanzo MC, Balakrishnan R, Cherry JM, Hong EL.

Database (Oxford). 2012 Mar 20;2012:bas001. doi: 10.1093/database/bas001. Print 2012.

16.

The Gene Ontology: enhancements for 2011.

Gene Ontology Consortium.

Nucleic Acids Res. 2012 Jan;40(Database issue):D559-64. doi: 10.1093/nar/gkr1028. Epub 2011 Nov 18.

17.

Cardiovascular GO annotation initiative year 1 report: why cardiovascular GO?

Lovering RC, Dimmer E, Khodiyar VK, Barrell DG, Scambler P, Hubank M, Apweiler R, Talmud PJ.

Proteomics. 2008 May;8(10):1950-3. doi: 10.1002/pmic.200800078.

PMID:
18491309
18.

Creating the gene ontology resource: design and implementation.

Gene Ontology Consortium.

Genome Res. 2001 Aug;11(8):1425-33.

19.

The what, where, how and why of gene ontology--a primer for bioinformaticians.

du Plessis L, Skunca N, Dessimoz C.

Brief Bioinform. 2011 Nov;12(6):723-35. doi: 10.1093/bib/bbr002. Epub 2011 Feb 17.

20.

The Gene Ontology (GO) project: structured vocabularies for molecular biology and their application to genome and expression analysis.

Blake JA, Harris MA.

Curr Protoc Bioinformatics. 2002 Nov;Chapter 7:Unit 7.2. doi: 10.1002/0471250953.bi0702s00.

PMID:
18792943

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