Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 82

1.

Protein function prediction: towards integration of similarity metrics.

Erdin S, Lisewski AM, Lichtarge O.

Curr Opin Struct Biol. 2011 Apr;21(2):180-8. doi: 10.1016/j.sbi.2011.02.001. Epub 2011 Feb 24. Review.

2.

Annotation of proteins of unknown function: initial enzyme results.

McKay T, Hart K, Horn A, Kessler H, Dodge G, Bardhi K, Bardhi K, Mills JL, Bernstein HJ, Craig PA.

J Struct Funct Genomics. 2015 Mar;16(1):43-54. doi: 10.1007/s10969-015-9194-5. Epub 2015 Jan 29.

3.

Functional coherence metrics in protein families.

Bastos HP, Sousa L, Clarke LA, Couto FM.

J Biomed Semantics. 2016 Jun 23;7(1):41. doi: 10.1186/s13326-016-0076-y.

4.

Prediction of protein function from protein sequence and structure.

Whisstock JC, Lesk AM.

Q Rev Biophys. 2003 Aug;36(3):307-40. Review.

PMID:
15029827
6.

Protein structure prediction and analysis as a tool for functional genomics.

Baker EN, Arcus VL, Lott JS.

Appl Bioinformatics. 2003;2(3 Suppl):S3-10.

PMID:
15130810
7.

Explore the hidden treasure in protein-protein interaction networks - an iterative model for predicting protein functions.

Wang D, Hou J.

J Bioinform Comput Biol. 2015 Oct;13(5):1550026. doi: 10.1142/S0219720015500262. Epub 2015 Sep 1.

PMID:
26449174
8.

Protein structure prediction based on sequence similarity.

Jaroszewski L.

Methods Mol Biol. 2009;569:129-56. doi: 10.1007/978-1-59745-524-4_7.

PMID:
19623489
9.

Towards more accurate prediction of protein folding rates: a review of the existing Web-based bioinformatics approaches.

Chang CC, Tey BT, Song J, Ramanan RN.

Brief Bioinform. 2015 Mar;16(2):314-24. doi: 10.1093/bib/bbu007. Epub 2014 Mar 11. Review.

PMID:
24621527
10.

Software Suite for Gene and Protein Annotation Prediction and Similarity Search.

Chicco D, Masseroli M.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Jul-Aug;12(4):837-43. doi: 10.1109/TCBB.2014.2382127.

PMID:
26357324
11.

A statistical model of protein sequence similarity and function similarity reveals overly-specific function predictions.

Louie B, Higdon R, Kolker E.

PLoS One. 2009 Oct 21;4(10):e7546. doi: 10.1371/journal.pone.0007546.

12.

Correlated Protein Function Prediction via Maximization of Data-Knowledge Consistency.

Wang H, Huang H, Ding C.

J Comput Biol. 2015 Jun;22(6):546-62. doi: 10.1089/cmb.2014.0172. Epub 2015 Apr 29.

PMID:
25922963
13.
14.

Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins.

Kuhn M, Meiler J, Baker D.

Proteins. 2004 Feb 1;54(2):282-8.

PMID:
14696190
15.

[Computational method for prediction of protein functional sites using specificity determinants].

Kalinina OV, Rassel RB, Rakhmaninova AB, Gel'fand MS.

Mol Biol (Mosk). 2007 Jan-Feb;41(1):151-62. Russian.

PMID:
17380902
16.

Biases in the experimental annotations of protein function and their effect on our understanding of protein function space.

Schnoes AM, Ream DC, Thorman AW, Babbitt PC, Friedberg I.

PLoS Comput Biol. 2013;9(5):e1003063. doi: 10.1371/journal.pcbi.1003063. Epub 2013 May 30.

17.

Cotranslational protein folding--fact or fiction?

Deane CM, Dong M, Huard FP, Lance BK, Wood GR.

Bioinformatics. 2007 Jul 1;23(13):i142-8.

PMID:
17646290
18.

KB-Rank: efficient protein structure and functional annotation identification via text query.

Julfayev ES, McLaughlin RJ, Tao YP, McLaughlin WA.

J Struct Funct Genomics. 2012 Jun;13(2):101-10. doi: 10.1007/s10969-012-9125-7. Epub 2012 Jan 21.

19.

Protein structure prediction and structural genomics.

Baker D, Sali A.

Science. 2001 Oct 5;294(5540):93-6.

PMID:
11588250
20.

Incorporating homologues into sequence embeddings for protein analysis.

Eskin E, Snir S.

J Bioinform Comput Biol. 2007 Jun;5(3):717-38.

PMID:
17688313

Supplemental Content

Support Center