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Items: 1 to 20 of 93

1.

Characterization of the contradictory chromatin signatures at the 3' exons of zinc finger genes.

Blahnik KR, Dou L, Echipare L, Iyengar S, O'Geen H, Sanchez E, Zhao Y, Marra MA, Hirst M, Costello JF, Korf I, Farnham PJ.

PLoS One. 2011 Feb 15;6(2):e17121. doi: 10.1371/journal.pone.0017121.

2.

Relationship between gene body DNA methylation and intragenic H3K9me3 and H3K36me3 chromatin marks.

Hahn MA, Wu X, Li AX, Hahn T, Pfeifer GP.

PLoS One. 2011 Apr 19;6(4):e18844. doi: 10.1371/journal.pone.0018844.

3.

ATRX binds to atypical chromatin domains at the 3' exons of zinc finger genes to preserve H3K9me3 enrichment.

Valle-GarcĂ­a D, Qadeer ZA, McHugh DS, Ghiraldini FG, Chowdhury AH, Hasson D, Dyer MA, Recillas-Targa F, Bernstein E.

Epigenetics. 2016 Jun 2;11(6):398-414. doi: 10.1080/15592294.2016.1169351. Epub 2016 Mar 30.

4.

Coordinate H3K9 and DNA methylation silencing of ZNFs in toxicant-induced malignant transformation.

Severson PL, Tokar EJ, Vrba L, Waalkes MP, Futscher BW.

Epigenetics. 2013 Oct;8(10):1080-8. doi: 10.4161/epi.25926. Epub 2013 Aug 6.

5.

ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes.

Frietze S, O'Geen H, Blahnik KR, Jin VX, Farnham PJ.

PLoS One. 2010 Dec 8;5(12):e15082. doi: 10.1371/journal.pone.0015082.

6.

Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs.

O'Geen H, Squazzo SL, Iyengar S, Blahnik K, Rinn JL, Chang HY, Green R, Farnham PJ.

PLoS Genet. 2007 Jun;3(6):e89. Epub 2007 Apr 19.

7.

Differential chromatin marking of introns and expressed exons by H3K36me3.

Kolasinska-Zwierz P, Down T, Latorre I, Liu T, Liu XS, Ahringer J.

Nat Genet. 2009 Mar;41(3):376-81. doi: 10.1038/ng.322. Epub 2009 Feb 1.

8.

Differentially expressed genes are marked by histone 3 lysine 9 trimethylation in human cancer cells.

Wiencke JK, Zheng S, Morrison Z, Yeh RF.

Oncogene. 2008 Apr 10;27(17):2412-21. Epub 2007 Oct 29.

PMID:
17968314
9.

Functional analysis of KAP1 genomic recruitment.

Iyengar S, Ivanov AV, Jin VX, Rauscher FJ 3rd, Farnham PJ.

Mol Cell Biol. 2011 May;31(9):1833-47. doi: 10.1128/MCB.01331-10. Epub 2011 Feb 22.

10.

The ancient mammalian KRAB zinc finger gene cluster on human chromosome 8q24.3 illustrates principles of C2H2 zinc finger evolution associated with unique expression profiles in human tissues.

Lorenz P, Dietmann S, Wilhelm T, Koczan D, Autran S, Gad S, Wen G, Ding G, Li Y, Rousseau-Merck MF, Thiesen HJ.

BMC Genomics. 2010 Mar 26;11:206. doi: 10.1186/1471-2164-11-206.

11.

Discovery and annotation of functional chromatin signatures in the human genome.

Hon G, Wang W, Ren B.

PLoS Comput Biol. 2009 Nov;5(11):e1000566. doi: 10.1371/journal.pcbi.1000566. Epub 2009 Nov 13.

12.

Genome-wide analysis of the CCCH zinc finger gene family in Medicago truncatula.

Zhang C, Zhang H, Zhao Y, Jiang H, Zhu S, Cheng B, Xiang Y.

Plant Cell Rep. 2013 Oct;32(10):1543-55. doi: 10.1007/s00299-013-1466-6. Epub 2013 Jun 9.

PMID:
23749175
13.

Histone modifications involved in cassette exon inclusions: a quantitative and interpretable analysis.

Liu H, Jin T, Guan J, Zhou S.

BMC Genomics. 2014 Dec 19;15:1148. doi: 10.1186/1471-2164-15-1148.

14.

Investigating repetitively matching short sequencing reads: the enigmatic nature of H3K9me3.

Rosenfeld JA, Xuan Z, DeSalle R.

Epigenetics. 2009 Oct 1;4(7):476-86. Epub 2009 Oct 14.

PMID:
19786836
15.

Comparative analyses of histone H3K9 trimethylations in the heart and spleen of normal humans.

Sui W, Cao C, Che W, Chen J, Xue W, Liu P, Guo L, Dai Y.

Genet Mol Res. 2014 Mar 17;13(1):1697-706. doi: 10.4238/2014.January.14.5.

16.

Diversity of Prdm9 zinc finger array in wild mice unravels new facets of the evolutionary turnover of this coding minisatellite.

Buard J, Rivals E, Dunoyer de Segonzac D, Garres C, Caminade P, de Massy B, Boursot P.

PLoS One. 2014 Jan 13;9(1):e85021. doi: 10.1371/journal.pone.0085021. eCollection 2014 Jan 13.

17.
18.

Cloning and characterization of a novel zinc finger gene in Xp11.2.

Derry JM, Jess U, Francke U.

Genomics. 1995 Nov 20;30(2):361-5.

PMID:
8586441
19.

Contrasting chromatin organization of CpG islands and exons in the human genome.

Choi JK.

Genome Biol. 2010;11(7):R70. doi: 10.1186/gb-2010-11-7-r70. Epub 2010 Jul 5.

20.

Deep vertebrate roots for mammalian zinc finger transcription factor subfamilies.

Liu H, Chang LH, Sun Y, Lu X, Stubbs L.

Genome Biol Evol. 2014 Mar;6(3):510-25. doi: 10.1093/gbe/evu030.

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