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Items: 1 to 20 of 139

1.

The role of duplications in the evolution of genomes highlights the need for evolutionary-based approaches in comparative genomics.

Levasseur A, Pontarotti P.

Biol Direct. 2011 Feb 18;6:11. doi: 10.1186/1745-6150-6-11. Review.

2.

Yeast evolution and comparative genomics.

Liti G, Louis EJ.

Annu Rev Microbiol. 2005;59:135-53. Review.

PMID:
15877535
3.

Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation.

Pan G, Xu J, Li T, Xia Q, Liu SL, Zhang G, Li S, Li C, Liu H, Yang L, Liu T, Zhang X, Wu Z, Fan W, Dang X, Xiang H, Tao M, Li Y, Hu J, Li Z, Lin L, Luo J, Geng L, Wang L, Long M, Wan Y, He N, Zhang Z, Lu C, Keeling PJ, Wang J, Xiang Z, Zhou Z.

BMC Genomics. 2013 Mar 16;14:186. doi: 10.1186/1471-2164-14-186.

4.

Evolutionary dynamics and functional specialization of plant paralogs formed by whole and small-scale genome duplications.

Carretero-Paulet L, Fares MA.

Mol Biol Evol. 2012 Nov;29(11):3541-51. doi: 10.1093/molbev/mss162. Epub 2012 Jun 24.

PMID:
22734049
5.

Evolutionary dynamics of duplicated genes in plants.

Lawton-Rauh A.

Mol Phylogenet Evol. 2003 Dec;29(3):396-409. Review.

PMID:
14615182
6.

The evolution of gene duplicates.

Otto SP, Yong P.

Adv Genet. 2002;46:451-83. Review.

PMID:
11931235
7.

Genome duplication and gene-family evolution: the case of three OXPHOS gene families.

De Grassi A, Lanave C, Saccone C.

Gene. 2008 Sep 15;421(1-2):1-6. doi: 10.1016/j.gene.2008.05.011. Epub 2008 Jun 23. Review.

PMID:
18573316
8.

Extensive divergence in alternative splicing patterns after gene and genome duplication during the evolutionary history of Arabidopsis.

Zhang PG, Huang SZ, Pin AL, Adams KL.

Mol Biol Evol. 2010 Jul;27(7):1686-97. doi: 10.1093/molbev/msq054. Epub 2010 Feb 25.

PMID:
20185454
9.

Analysis of gene order evolution beyond single-copy genes.

El-Mabrouk N, Sankoff D.

Methods Mol Biol. 2012;855:397-429. doi: 10.1007/978-1-61779-582-4_15. Review.

PMID:
22407718
10.

Role of selection in fixation of gene duplications.

Kondrashov FA, Kondrashov AS.

J Theor Biol. 2006 Mar 21;239(2):141-51. Epub 2005 Oct 20. Review.

PMID:
16242725
11.

Segmental duplication density decrease with distance to human-mouse breaks of synteny.

Sainz J, Rovensky P, Gudjonsson SA, Thorleifsson G, Stefansson K, Gulcher JR.

Eur J Hum Genet. 2006 Feb;14(2):216-21.

12.

Recent duplication of the common carp (Cyprinus carpio L.) genome as revealed by analyses of microsatellite loci.

David L, Blum S, Feldman MW, Lavi U, Hillel J.

Mol Biol Evol. 2003 Sep;20(9):1425-34. Epub 2003 Jun 27.

PMID:
12832638
13.

How evolution of genomes is reflected in exact DNA sequence match statistics.

Massip F, Sheinman M, Schbath S, Arndt PF.

Mol Biol Evol. 2015 Feb;32(2):524-35. doi: 10.1093/molbev/msu313. Epub 2014 Nov 13.

14.

Insights into molecular evolution from yeast genomics.

Zarin T, Moses AM.

Yeast. 2014 Jul;31(7):233-41. doi: 10.1002/yea.3018. Epub 2014 May 26. Review.

15.

Plant evolutionary genomics.

Mitchell-Olds T, Clauss MJ.

Curr Opin Plant Biol. 2002 Feb;5(1):74-9. Review.

PMID:
11788312
16.

Distinguishing among evolutionary models for the maintenance of gene duplicates.

Hahn MW.

J Hered. 2009 Sep-Oct;100(5):605-17. doi: 10.1093/jhered/esp047. Epub 2009 Jul 13. Review.

PMID:
19596713
17.

Comparative genomics as a time machine: how relative gene dosage and metabolic requirements shaped the time-dependent resolution of yeast polyploidy.

Conant GC.

Mol Biol Evol. 2014 Dec;31(12):3184-93. doi: 10.1093/molbev/msu250. Epub 2014 Aug 25.

PMID:
25158798
18.

Murine segmental duplications are hot spots for chromosome and gene evolution.

Armengol L, Marquès-Bonet T, Cheung J, Khaja R, González JR, Scherer SW, Navarro A, Estivill X.

Genomics. 2005 Dec;86(6):692-700. Epub 2005 Oct 26.

19.

Variation in gene duplicates with low synonymous divergence in Saccharomyces cerevisiae relative to Caenorhabditis elegans.

Katju V, Farslow JC, Bergthorsson U.

Genome Biol. 2009;10(7):R75. doi: 10.1186/gb-2009-10-7-r75. Epub 2009 Jul 13.

20.

Gene loss and evolutionary rates following whole-genome duplication in teleost fishes.

Brunet FG, Roest Crollius H, Paris M, Aury JM, Gibert P, Jaillon O, Laudet V, Robinson-Rechavi M.

Mol Biol Evol. 2006 Sep;23(9):1808-16. Epub 2006 Jun 29.

PMID:
16809621

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