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Items: 1 to 20 of 188

1.

Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer.

Warf MB, Johnson WE, Bass BL.

RNA. 2011 Apr;17(4):563-77. doi: 10.1261/rna.2432311. Epub 2011 Feb 9.

2.

Intronic microRNA precursors that bypass Drosha processing.

Ruby JG, Jan CH, Bartel DP.

Nature. 2007 Jul 5;448(7149):83-6. Epub 2007 Jun 24.

3.

MicroRNAs, macrocontrol: regulation of miRNA processing.

Slezak-Prochazka I, Durmus S, Kroesen BJ, van den Berg A.

RNA. 2010 Jun;16(6):1087-95. doi: 10.1261/rna.1804410. Epub 2010 Apr 27.

4.

Processing of primary microRNAs by the Microprocessor complex.

Denli AM, Tops BB, Plasterk RH, Ketting RF, Hannon GJ.

Nature. 2004 Nov 11;432(7014):231-5. Epub 2004 Nov 7.

PMID:
15531879
5.

Autoregulation of microRNA biogenesis by let-7 and Argonaute.

Zisoulis DG, Kai ZS, Chang RK, Pasquinelli AE.

Nature. 2012 Jun 28;486(7404):541-4. doi: 10.1038/nature11134.

6.

Computational analysis of microRNA targets in Caenorhabditis elegans.

Watanabe Y, Yachie N, Numata K, Saito R, Kanai A, Tomita M.

Gene. 2006 Jan 3;365:2-10. Epub 2005 Dec 13.

PMID:
16356665
7.

Global profiling of miRNAs and the hairpin precursors: insights into miRNA processing and novel miRNA discovery.

Li N, You X, Chen T, Mackowiak SD, Friedländer MR, Weigt M, Du H, Gogol-Döring A, Chang Z, Dieterich C, Hu Y, Chen W.

Nucleic Acids Res. 2013 Apr 1;41(6):3619-34. doi: 10.1093/nar/gkt072. Epub 2013 Feb 8.

8.

Splicing remodels the let-7 primary microRNA to facilitate Drosha processing in Caenorhabditis elegans.

Mondol V, Ahn BC, Pasquinelli AE.

RNA. 2015 Aug;21(8):1396-403. doi: 10.1261/rna.052118.115. Epub 2015 Jun 16.

9.

MatureBayes: a probabilistic algorithm for identifying the mature miRNA within novel precursors.

Gkirtzou K, Tsamardinos I, Tsakalides P, Poirazi P.

PLoS One. 2010 Aug 6;5(8):e11843. doi: 10.1371/journal.pone.0011843.

10.

The regulatory epicenter of miRNAs.

Jha A, Mehra M, Shankar R.

J Biosci. 2011 Sep;36(4):621-38.

11.

Sequence features of Drosha and Dicer cleavage sites affect the complexity of isomiRs.

Starega-Roslan J, Witkos TM, Galka-Marciniak P, Krzyzosiak WJ.

Int J Mol Sci. 2015 Apr 10;16(4):8110-27. doi: 10.3390/ijms16048110.

12.

Active turnover modulates mature microRNA activity in Caenorhabditis elegans.

Chatterjee S, Grosshans H.

Nature. 2009 Sep 24;461(7263):546-9. doi: 10.1038/nature08349. Epub 2009 Sep 6.

PMID:
19734881
13.

A central role for the primary microRNA stem in guiding the position and efficiency of Drosha processing of a viral pri-miRNA.

Burke JM, Kelenis DP, Kincaid RP, Sullivan CS.

RNA. 2014 Jul;20(7):1068-77. doi: 10.1261/rna.044537.114. Epub 2014 May 22.

14.

Nucleotide sequence of miRNA precursor contributes to cleavage site selection by Dicer.

Starega-Roslan J, Galka-Marciniak P, Krzyzosiak WJ.

Nucleic Acids Res. 2015 Dec 15;43(22):10939-51. doi: 10.1093/nar/gkv968. Epub 2015 Sep 30.

15.

The nuclear RNase III Drosha initiates microRNA processing.

Lee Y, Ahn C, Han J, Choi H, Kim J, Yim J, Lee J, Provost P, Rådmark O, Kim S, Kim VN.

Nature. 2003 Sep 25;425(6956):415-9.

16.

Reliable prediction of Drosha processing sites improves microRNA gene prediction.

Helvik SA, Snøve O Jr, Saetrom P.

Bioinformatics. 2007 Jan 15;23(2):142-9. Epub 2006 Nov 14.

PMID:
17105718
17.

miRdentify: high stringency miRNA predictor identifies several novel animal miRNAs.

Hansen TB, Venø MT, Kjems J, Damgaard CK.

Nucleic Acids Res. 2014;42(16):e124. doi: 10.1093/nar/gku598. Epub 2014 Jul 22.

18.

Genome-wide annotation of microRNA primary transcript structures reveals novel regulatory mechanisms.

Chang TC, Pertea M, Lee S, Salzberg SL, Mendell JT.

Genome Res. 2015 Sep;25(9):1401-9. doi: 10.1101/gr.193607.115.

19.

Analysis of Nearly One Thousand Mammalian Mirtrons Reveals Novel Features of Dicer Substrates.

Wen J, Ladewig E, Shenker S, Mohammed J, Lai EC.

PLoS Comput Biol. 2015 Sep 1;11(9):e1004441. doi: 10.1371/journal.pcbi.1004441. eCollection 2015 Sep 1.

20.

Structural basis of microRNA length variety.

Starega-Roslan J, Krol J, Koscianska E, Kozlowski P, Szlachcic WJ, Sobczak K, Krzyzosiak WJ.

Nucleic Acids Res. 2011 Jan;39(1):257-68. doi: 10.1093/nar/gkq727. Epub 2010 Aug 25.

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