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Items: 1 to 20 of 104

1.

Chromatin signatures of the Drosophila replication program.

Eaton ML, Prinz JA, MacAlpine HK, Tretyakov G, Kharchenko PV, MacAlpine DM.

Genome Res. 2011 Feb;21(2):164-74. doi: 10.1101/gr.116038.110. Epub 2010 Dec 22.

2.

DNA replication and transcription programs respond to the same chromatin cues.

Lubelsky Y, Prinz JA, DeNapoli L, Li Y, Belsky JA, MacAlpine DM.

Genome Res. 2014 Jul;24(7):1102-14. doi: 10.1101/gr.160010.113.

3.

The chromatin environment shapes DNA replication origin organization and defines origin classes.

Cayrou C, Ballester B, Peiffer I, Fenouil R, Coulombe P, Andrau JC, van Helden J, Méchali M.

Genome Res. 2015 Dec;25(12):1873-85. doi: 10.1101/gr.192799.115. Epub 2015 Nov 11.

4.

Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection.

Karnani N, Taylor CM, Malhotra A, Dutta A.

Mol Biol Cell. 2010 Feb 1;21(3):393-404. doi: 10.1091/mbc.E09-08-0707. Epub 2009 Dec 2.

5.

High-resolution profiling of Drosophila replication start sites reveals a DNA shape and chromatin signature of metazoan origins.

Comoglio F, Schlumpf T, Schmid V, Rohs R, Beisel C, Paro R.

Cell Rep. 2015 May 5;11(5):821-34. doi: 10.1016/j.celrep.2015.03.070. Epub 2015 Apr 23.

6.

Analysis of model replication origins in Drosophila reveals new aspects of the chromatin landscape and its relationship to origin activity and the prereplicative complex.

Liu J, McConnell K, Dixon M, Calvi BR.

Mol Biol Cell. 2012 Jan;23(1):200-12. doi: 10.1091/mbc.E11-05-0409. Epub 2011 Nov 2.

7.

Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading.

MacAlpine HK, Gordân R, Powell SK, Hartemink AJ, MacAlpine DM.

Genome Res. 2010 Feb;20(2):201-11. doi: 10.1101/gr.097873.109. Epub 2009 Dec 7.

8.

Forced binding of the origin of replication complex to chromosomal sites in Drosophila S2 cells creates an origin of replication.

Crevel G, Cotterill S.

J Cell Sci. 2012 Feb 15;125(Pt 4):965-72. doi: 10.1242/jcs.094409. Epub 2012 Mar 15.

9.

DNA sequence templates adjacent nucleosome and ORC sites at gene amplification origins in Drosophila.

Liu J, Zimmer K, Rusch DB, Paranjape N, Podicheti R, Tang H, Calvi BR.

Nucleic Acids Res. 2015 Oct 15;43(18):8746-61. doi: 10.1093/nar/gkv766. Epub 2015 Jul 30.

10.
11.

Insulator protein Su(Hw) recruits SAGA and Brahma complexes and constitutes part of Origin Recognition Complex-binding sites in the Drosophila genome.

Vorobyeva NE, Mazina MU, Golovnin AK, Kopytova DV, Gurskiy DY, Nabirochkina EN, Georgieva SG, Georgiev PG, Krasnov AN.

Nucleic Acids Res. 2013 Jun;41(11):5717-30. doi: 10.1093/nar/gkt297. Epub 2013 Apr 22.

12.

Selectivity of ORC binding sites and the relation to replication timing, fragile sites, and deletions in cancers.

Miotto B, Ji Z, Struhl K.

Proc Natl Acad Sci U S A. 2016 Aug 16;113(33):E4810-9. doi: 10.1073/pnas.1609060113. Epub 2016 Jul 19.

13.

[Ability of Su(Hw) to create a platform for ORC binding does not depend on the type of surrounding chromatin].

Mazina MIu, Vorob'eva NE, Krasnov AN.

Tsitologiia. 2013;55(4):218-24. Russian.

PMID:
23875451
14.

The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin.

Müller P, Park S, Shor E, Huebert DJ, Warren CL, Ansari AZ, Weinreich M, Eaton ML, MacAlpine DM, Fox CA.

Genes Dev. 2010 Jul 1;24(13):1418-33. doi: 10.1101/gad.1906410.

15.

Combinatorial modeling of chromatin features quantitatively predicts DNA replication timing in Drosophila.

Comoglio F, Paro R.

PLoS Comput Biol. 2014 Jan;10(1):e1003419. doi: 10.1371/journal.pcbi.1003419. Epub 2014 Jan 23.

16.

The Histone Variant H3.3 Is Enriched at Drosophila Amplicon Origins but Does Not Mark Them for Activation.

Paranjape NP, Calvi BR.

G3 (Bethesda). 2016 Jun 1;6(6):1661-71. doi: 10.1534/g3.116.028068.

17.

DNA replication origins.

Leonard AC, Méchali M.

Cold Spring Harb Perspect Biol. 2013 Oct 1;5(10):a010116. doi: 10.1101/cshperspect.a010116. Review.

18.

Drosophila ORC specifically binds to ACE3, an origin of DNA replication control element.

Austin RJ, Orr-Weaver TL, Bell SP.

Genes Dev. 1999 Oct 15;13(20):2639-49.

19.

RNA-dependent recruitment of the origin recognition complex.

Norseen J, Thomae A, Sridharan V, Aiyar A, Schepers A, Lieberman PM.

EMBO J. 2008 Nov 19;27(22):3024-35. doi: 10.1038/emboj.2008.221. Epub 2008 Oct 23.

20.

Replication landscape of the human genome.

Petryk N, Kahli M, d'Aubenton-Carafa Y, Jaszczyszyn Y, Shen Y, Silvain M, Thermes C, Chen CL, Hyrien O.

Nat Commun. 2016 Jan 11;7:10208. doi: 10.1038/ncomms10208.

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