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Items: 1 to 20 of 120

1.

Noisy splicing drives mRNA isoform diversity in human cells.

Pickrell JK, Pai AA, Gilad Y, Pritchard JK.

PLoS Genet. 2010 Dec 9;6(12):e1001236. doi: 10.1371/journal.pgen.1001236.

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Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5' splice site strength.

Wickramasinghe VO, Gonzàlez-Porta M, Perera D, Bartolozzi AR, Sibley CR, Hallegger M, Ule J, Marioni JC, Venkitaraman AR.

Genome Biol. 2015 Sep 21;16:201. doi: 10.1186/s13059-015-0749-3.

4.

A systematic analysis of intronic sequences downstream of 5' splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation.

Aznarez I, Barash Y, Shai O, He D, Zielenski J, Tsui LC, Parkinson J, Frey BJ, Rommens JM, Blencowe BJ.

Genome Res. 2008 Aug;18(8):1247-58. doi: 10.1101/gr.073155.107. Epub 2008 May 2.

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Alternative splicing regulation at tandem 3' splice sites.

Akerman M, Mandel-Gutfreund Y.

Nucleic Acids Res. 2006 Jan 3;34(1):23-31. Print 2006.

7.

Computational analysis of splicing errors and mutations in human transcripts.

Kurmangaliyev YZ, Gelfand MS.

BMC Genomics. 2008 Jan 14;9:13. doi: 10.1186/1471-2164-9-13.

8.

Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive.

Nellore A, Jaffe AE, Fortin JP, Alquicira-Hernández J, Collado-Torres L, Wang S, Phillips Iii RA, Karbhari N, Hansen KD, Langmead B, Leek JT.

Genome Biol. 2016 Dec 30;17(1):266. doi: 10.1186/s13059-016-1118-6.

9.

Conserved RNA cis-elements regulate alternative splicing of Lepidopteran doublesex.

Wang XY, Zheng ZZ, Song HS, Xu YZ.

Insect Biochem Mol Biol. 2014 Jan;44:1-11. doi: 10.1016/j.ibmb.2013.10.009. Epub 2013 Nov 12.

PMID:
24239545
10.

Single base-pair substitutions in exon-intron junctions of human genes: nature, distribution, and consequences for mRNA splicing.

Krawczak M, Thomas NS, Hundrieser B, Mort M, Wittig M, Hampe J, Cooper DN.

Hum Mutat. 2007 Feb;28(2):150-8.

PMID:
17001642
11.

Large introns in relation to alternative splicing and gene evolution: a case study of Drosophila bruno-3.

Kandul NP, Noor MA.

BMC Genet. 2009 Oct 19;10:67. doi: 10.1186/1471-2156-10-67.

12.

The architecture of pre-mRNAs affects mechanisms of splice-site pairing.

Fox-Walsh KL, Dou Y, Lam BJ, Hung SP, Baldi PF, Hertel KJ.

Proc Natl Acad Sci U S A. 2005 Nov 8;102(45):16176-81. Epub 2005 Oct 31.

13.

Cancer-Associated Perturbations in Alternative Pre-messenger RNA Splicing.

Shkreta L, Bell B, Revil T, Venables JP, Prinos P, Elela SA, Chabot B.

Cancer Treat Res. 2013;158:41-94. doi: 10.1007/978-3-642-31659-3_3. Review.

PMID:
24222354
14.

Unconstrained mining of transcript data reveals increased alternative splicing complexity in the human transcriptome.

Mollet IG, Ben-Dov C, Felício-Silva D, Grosso AR, Eleutério P, Alves R, Staller R, Silva TS, Carmo-Fonseca M.

Nucleic Acids Res. 2010 Aug;38(14):4740-54. doi: 10.1093/nar/gkq197. Epub 2010 Apr 12.

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Computational analysis reveals a correlation of exon-skipping events with splicing, transcription and epigenetic factors.

Ye Z, Chen Z, Lan X, Hara S, Sunkel B, Huang TH, Elnitski L, Wang Q, Jin VX.

Nucleic Acids Res. 2014 Mar;42(5):2856-69. doi: 10.1093/nar/gkt1338. Epub 2013 Dec 24.

17.

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome.

Sultan M, Schulz MH, Richard H, Magen A, Klingenhoff A, Scherf M, Seifert M, Borodina T, Soldatov A, Parkhomchuk D, Schmidt D, O'Keeffe S, Haas S, Vingron M, Lehrach H, Yaspo ML.

Science. 2008 Aug 15;321(5891):956-60. doi: 10.1126/science.1160342. Epub 2008 Jul 3.

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Deep RNA sequencing reveals a high frequency of alternative splicing events in the fungus Trichoderma longibrachiatum.

Xie BB, Li D, Shi WL, Qin QL, Wang XW, Rong JC, Sun CY, Huang F, Zhang XY, Dong XW, Chen XL, Zhou BC, Zhang YZ, Song XY.

BMC Genomics. 2015 Feb 6;16:54. doi: 10.1186/s12864-015-1251-8.

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