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NCBI Epigenomics: a new public resource for exploring epigenomic data sets.

Fingerman IM, McDaniel L, Zhang X, Ratzat W, Hassan T, Jiang Z, Cohen RF, Schuler GD.

Nucleic Acids Res. 2011 Jan;39(Database issue):D908-12. doi: 10.1093/nar/gkq1146.


NCBI Epigenomics: what's new for 2013.

Fingerman IM, Zhang X, Ratzat W, Husain N, Cohen RF, Schuler GD.

Nucleic Acids Res. 2013 Jan;41(Database issue):D221-5. doi: 10.1093/nar/gks1171.


CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.


NCBI GEO: mining millions of expression profiles--database and tools.

Barrett T, Suzek TO, Troup DB, Wilhite SE, Ngau WC, Ledoux P, Rudnev D, Lash AE, Fujibuchi W, Edgar R.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D562-6.


Database resources of the National Center for Biotechnology Information.

Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, Dicuccio M, Federhen S, Feolo M, Fingerman IM, Geer LY, Helmberg W, Kapustin Y, Krasnov S, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Miller V, Karsch-Mizrachi I, Ostell J, Panchenko A, Phan L, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Slotta D, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Wang Y, Wilbur WJ, Yaschenko E, Ye J.

Nucleic Acids Res. 2012 Jan;40(Database issue):D13-25. doi: 10.1093/nar/gkr1184.


Database resources of the National Center for Biotechnology Information.

Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Edgar R, Federhen S, Geer LY, Kapustin Y, Khovayko O, Landsman D, Lipman DJ, Madden TL, Maglott DR, Ostell J, Miller V, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Sirotkin K, Souvorov A, Starchenko G, Tatusov RL, Tatusova TA, Wagner L, Yaschenko E.

Nucleic Acids Res. 2007 Jan;35(Database issue):D5-12.


NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.

Pruitt KD, Tatusova T, Maglott DR.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.


OMIA (Online Mendelian Inheritance in Animals): an enhanced platform and integration into the Entrez search interface at NCBI.

Lenffer J, Nicholas FW, Castle K, Rao A, Gregory S, Poidinger M, Mailman MD, Ranganathan S.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D599-601.


Database resources of the National Center for Biotechnology Information.

NCBI Resource Coordinators..

Nucleic Acids Res. 2014 Jan;42(Database issue):D7-17. doi: 10.1093/nar/gkt1146.


Introduction into the analysis of high-throughput-sequencing based epigenome data.

Huss M.

Brief Bioinform. 2010 Sep;11(5):512-23. doi: 10.1093/bib/bbq014. Review.


Podbat: a novel genomic tool reveals Swr1-independent H2A.Z incorporation at gene coding sequences through epigenetic meta-analysis.

Sadeghi L, Bonilla C, Strålfors A, Ekwall K, Svensson JP.

PLoS Comput Biol. 2011 Aug;7(8):e1002163. doi: 10.1371/journal.pcbi.1002163.


Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.

Edgar R, Domrachev M, Lash AE.

Nucleic Acids Res. 2002 Jan 1;30(1):207-10.


methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data.

Kishore K, de Pretis S, Lister R, Morelli MJ, Bianchi V, Amati B, Ecker JR, Pelizzola M.

BMC Bioinformatics. 2015 Sep 29;16:313. doi: 10.1186/s12859-015-0742-6.


dbSNP: a database of single nucleotide polymorphisms.

Smigielski EM, Sirotkin K, Ward M, Sherry ST.

Nucleic Acids Res. 2000 Jan 1;28(1):352-5.


Epigenomics in cancer management.

Costa FF.

Cancer Manag Res. 2010 Oct 27;2:255-65. doi: 10.2147/CMR.S7280.


BLAST: at the core of a powerful and diverse set of sequence analysis tools.

McGinnis S, Madden TL.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W20-5.


Mining microarray data at NCBI's Gene Expression Omnibus (GEO)*.

Barrett T, Edgar R.

Methods Mol Biol. 2006;338:175-90.


Rice-Map: a new-generation rice genome browser.

Wang J, Kong L, Zhao S, Zhang H, Tang L, Li Z, Gu X, Luo J, Gao G.

BMC Genomics. 2011 Mar 30;12:165. doi: 10.1186/1471-2164-12-165.


A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.


Epigenetics in C. elegans: facts and challenges.

Wenzel D, Palladino F, Jedrusik-Bode M.

Genesis. 2011 Aug;49(8):647-61. doi: 10.1002/dvg.20762. Review.

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