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Items: 1 to 20 of 152

1.

Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation.

Gilchrist DA, Dos Santos G, Fargo DC, Xie B, Gao Y, Li L, Adelman K.

Cell. 2010 Nov 12;143(4):540-51. doi: 10.1016/j.cell.2010.10.004.

2.

SAYP and Brahma are important for 'repressive' and 'transient' Pol II pausing.

Vorobyeva NE, Nikolenko JV, Nabirochkina EN, Krasnov AN, Shidlovskii YV, Georgieva SG.

Nucleic Acids Res. 2012 Aug;40(15):7319-31. doi: 10.1093/nar/gks472. Epub 2012 May 25.

3.

CBP Regulates Recruitment and Release of Promoter-Proximal RNA Polymerase II.

Boija A, Mahat DB, Zare A, Holmqvist PH, Philip P, Meyers DJ, Cole PA, Lis JT, Stenberg P, Mannervik M.

Mol Cell. 2017 Nov 2;68(3):491-503.e5. doi: 10.1016/j.molcel.2017.09.031. Epub 2017 Oct 19.

PMID:
29056321
4.

GAGA factor maintains nucleosome-free regions and has a role in RNA polymerase II recruitment to promoters.

Fuda NJ, Guertin MJ, Sharma S, Danko CG, Martins AL, Siepel A, Lis JT.

PLoS Genet. 2015 Mar 27;11(3):e1005108. doi: 10.1371/journal.pgen.1005108. eCollection 2015 Mar.

5.

Mediator, TATA-binding protein, and RNA polymerase II contribute to low histone occupancy at active gene promoters in yeast.

Ansari SA, Paul E, Sommer S, Lieleg C, He Q, Daly AZ, Rode KA, Barber WT, Ellis LC, LaPorta E, Orzechowski AM, Taylor E, Reeb T, Wong J, Korber P, Morse RH.

J Biol Chem. 2014 May 23;289(21):14981-95. doi: 10.1074/jbc.M113.529354. Epub 2014 Apr 11. Erratum in: J Biol Chem. 2016 May 6;291(19):9938.

6.
7.

GAGA factor, a positive regulator of global gene expression, modulates transcriptional pausing and organization of upstream nucleosomes.

Tsai SY, Chang YL, Swamy KB, Chiang RL, Huang DH.

Epigenetics Chromatin. 2016 Jul 27;9:32. doi: 10.1186/s13072-016-0082-4. eCollection 2016.

8.
9.

Precise maps of RNA polymerase reveal how promoters direct initiation and pausing.

Kwak H, Fuda NJ, Core LJ, Lis JT.

Science. 2013 Feb 22;339(6122):950-3. doi: 10.1126/science.1229386.

10.

NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly.

Gilchrist DA, Nechaev S, Lee C, Ghosh SK, Collins JB, Li L, Gilmour DS, Adelman K.

Genes Dev. 2008 Jul 15;22(14):1921-33. doi: 10.1101/gad.1643208.

11.

Negotiating the nucleosome: factors that allow RNA polymerase II to elongate through chromatin.

Armstrong JA.

Biochem Cell Biol. 2007 Aug;85(4):426-34. Review.

PMID:
17713578
12.

Distinct mechanisms of transcriptional pausing orchestrated by GAGA factor and M1BP, a novel transcription factor.

Li J, Gilmour DS.

EMBO J. 2013 Jul 3;32(13):1829-41. doi: 10.1038/emboj.2013.111. Epub 2013 May 24.

13.

The heat shock response: A case study of chromatin dynamics in gene regulation.

Teves SS, Henikoff S.

Biochem Cell Biol. 2013 Feb;91(1):42-8. doi: 10.1139/bcb-2012-0075. Epub 2013 Feb 13. Review.

PMID:
23442140
14.

Stably paused genes revealed through inhibition of transcription initiation by the TFIIH inhibitor triptolide.

Chen F, Gao X, Shilatifard A.

Genes Dev. 2015 Jan 1;29(1):39-47. doi: 10.1101/gad.246173.114.

15.

Paused RNA polymerase II inhibits new transcriptional initiation.

Shao W, Zeitlinger J.

Nat Genet. 2017 Jul;49(7):1045-1051. doi: 10.1038/ng.3867. Epub 2017 May 15.

PMID:
28504701
16.

Coupling polymerase pausing and chromatin landscapes for precise regulation of transcription.

Gilchrist DA, Adelman K.

Biochim Biophys Acta. 2012 Jul;1819(7):700-6. doi: 10.1016/j.bbagrm.2012.02.015. Epub 2012 Mar 2. Review.

17.

Genome-wide nucleosome specificity and function of chromatin remodellers in ES cells.

de Dieuleveult M, Yen K, Hmitou I, Depaux A, Boussouar F, Bou Dargham D, Jounier S, Humbertclaude H, Ribierre F, Baulard C, Farrell NP, Park B, Keime C, Carrière L, Berlivet S, Gut M, Gut I, Werner M, Deleuze JF, Olaso R, Aude JC, Chantalat S, Pugh BF, Gérard M.

Nature. 2016 Feb 4;530(7588):113-6. doi: 10.1038/nature16505. Epub 2016 Jan 27.

18.

A positioned +1 nucleosome enhances promoter-proximal pausing.

Jimeno-González S, Ceballos-Chávez M, Reyes JC.

Nucleic Acids Res. 2015 Mar 31;43(6):3068-78. doi: 10.1093/nar/gkv149. Epub 2015 Mar 3.

19.

The Hox proteins Ubx and AbdA collaborate with the transcription pausing factor M1BP to regulate gene transcription.

Zouaz A, Auradkar A, Delfini MC, Macchi M, Barthez M, Ela Akoa S, Bastianelli L, Xie G, Deng WM, Levine SS, Graba Y, Saurin AJ.

EMBO J. 2017 Oct 2;36(19):2887-2906. doi: 10.15252/embj.201695751. Epub 2017 Sep 4.

PMID:
28871058
20.

IUGR increases chromatin-remodeling factor Brg1 expression and binding to GR exon 1.7 promoter in newborn male rat hippocampus.

Ke X, McKnight RA, Gracey Maniar LE, Sun Y, Callaway CW, Majnik A, Lane RH, Cohen SS.

Am J Physiol Regul Integr Comp Physiol. 2015 Jul 15;309(2):R119-27. doi: 10.1152/ajpregu.00495.2014. Epub 2015 May 13.

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