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Items: 1 to 20 of 95

1.

Phospho.ELM: a database of phosphorylation sites--update 2011.

Dinkel H, Chica C, Via A, Gould CM, Jensen LJ, Gibson TJ, Diella F.

Nucleic Acids Res. 2011 Jan;39(Database issue):D261-7. doi: 10.1093/nar/gkq1104. Epub 2010 Nov 9.

2.

Phospho.ELM: a database of phosphorylation sites--update 2008.

Diella F, Gould CM, Chica C, Via A, Gibson TJ.

Nucleic Acids Res. 2008 Jan;36(Database issue):D240-4. Epub 2007 Oct 25.

3.

Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins.

Diella F, Cameron S, Gemünd C, Linding R, Via A, Kuster B, Sicheritz-Pontén T, Blom N, Gibson TJ.

BMC Bioinformatics. 2004 Jun 22;5:79.

4.

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites.

Zanzoni A, Ausiello G, Via A, Gherardini PF, Helmer-Citterich M.

Nucleic Acids Res. 2007 Jan;35(Database issue):D229-31. Epub 2006 Nov 16.

5.

Charge environments around phosphorylation sites in proteins.

Kitchen J, Saunders RE, Warwicker J.

BMC Struct Biol. 2008 Mar 25;8:19. doi: 10.1186/1472-6807-8-19.

6.

Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites.

Zanzoni A, Carbajo D, Diella F, Gherardini PF, Tramontano A, Helmer-Citterich M, Via A.

Nucleic Acids Res. 2011 Jan;39(Database issue):D268-71. doi: 10.1093/nar/gkq936. Epub 2010 Oct 21.

7.

NetworKIN: a resource for exploring cellular phosphorylation networks.

Linding R, Jensen LJ, Pasculescu A, Olhovsky M, Colwill K, Bork P, Yaffe MB, Pawson T.

Nucleic Acids Res. 2008 Jan;36(Database issue):D695-9. Epub 2007 Nov 2.

8.
9.

Global phosphoproteomic analysis of Daphnia pulex reveals evolutionary conservation of Ser/Thr/Tyr phosphorylation.

Kwon OK, Sim J, Yun KN, Kim JY, Lee S.

J Proteome Res. 2014 Mar 7;13(3):1327-35. doi: 10.1021/pr400911x. Epub 2014 Feb 11.

PMID:
24467309
10.

A novel sequence-based method for phosphorylation site prediction with feature selection and analysis.

He ZS, Shi XH, Kong XY, Zhu YB, Chou KC.

Protein Pept Lett. 2012 Jan;19(1):70-8.

PMID:
21919857
11.

A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database.

Jiménez JL, Hegemann B, Hutchins JR, Peters JM, Durbin R.

Genome Biol. 2007;8(5):R90.

12.

Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation.

Macek B, Gnad F, Soufi B, Kumar C, Olsen JV, Mijakovic I, Mann M.

Mol Cell Proteomics. 2008 Feb;7(2):299-307. Epub 2007 Oct 15.

13.

CPhos: a program to calculate and visualize evolutionarily conserved functional phosphorylation sites.

Zhao B, Pisitkun T, Hoffert JD, Knepper MA, Saeed F.

Proteomics. 2012 Nov;12(22):3299-303. doi: 10.1002/pmic.201200189. Epub 2012 Oct 29.

PMID:
23001821
14.

Using support vector machines to identify protein phosphorylation sites in viruses.

Huang SY, Shi SP, Qiu JD, Liu MC.

J Mol Graph Model. 2015 Mar;56:84-90. doi: 10.1016/j.jmgm.2014.12.005. Epub 2014 Dec 24.

PMID:
25569881
15.

Analysis of the serine/threonine/tyrosine phosphoproteome of the pathogenic bacterium Listeria monocytogenes reveals phosphorylated proteins related to virulence.

Misra SK, Milohanic E, Aké F, Mijakovic I, Deutscher J, Monnet V, Henry C.

Proteomics. 2011 Nov;11(21):4155-65. doi: 10.1002/pmic.201100259. Epub 2011 Sep 29.

PMID:
21956863
16.

dbPAF: an integrative database of protein phosphorylation in animals and fungi.

Ullah S, Lin S, Xu Y, Deng W, Ma L, Zhang Y, Liu Z, Xue Y.

Sci Rep. 2016 Mar 24;6:23534. doi: 10.1038/srep23534.

17.

Evolution of protein phosphorylation for distinct functional modules in vertebrate genomes.

Wang Z, Ding G, Geistlinger L, Li H, Liu L, Zeng R, Tateno Y, Li Y.

Mol Biol Evol. 2011 Mar;28(3):1131-40. doi: 10.1093/molbev/msq268. Epub 2010 Oct 18.

PMID:
20956806
18.

Sequence and structure-based prediction of eukaryotic protein phosphorylation sites.

Blom N, Gammeltoft S, Brunak S.

J Mol Biol. 1999 Dec 17;294(5):1351-62.

PMID:
10600390
19.

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins.

Durek P, Schudoma C, Weckwerth W, Selbig J, Walther D.

BMC Bioinformatics. 2009 Apr 21;10:117. doi: 10.1186/1471-2105-10-117.

20.

Evolutionary conservation of mammalian sperm proteins associates with overall, not tyrosine, phosphorylation in human spermatozoa.

Schumacher J, Ramljak S, Asif AR, Schaffrath M, Zischler H, Herlyn H.

J Proteome Res. 2013 Dec 6;12(12):5370-82. doi: 10.1021/pr400228c. Epub 2013 Sep 27.

PMID:
23919900

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