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Items: 1 to 20 of 138

1.

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.

Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, Doerks T, Stark M, Muller J, Bork P, Jensen LJ, von Mering C.

Nucleic Acids Res. 2011 Jan;39(Database issue):D561-8. doi: 10.1093/nar/gkq973. Epub 2010 Nov 2.

2.

STRING v9.1: protein-protein interaction networks, with increased coverage and integration.

Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, Jensen LJ.

Nucleic Acids Res. 2013 Jan;41(Database issue):D808-15. doi: 10.1093/nar/gks1094. Epub 2012 Nov 29.

3.

STRING 8--a global view on proteins and their functional interactions in 630 organisms.

Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, Muller J, Doerks T, Julien P, Roth A, Simonovic M, Bork P, von Mering C.

Nucleic Acids Res. 2009 Jan;37(Database issue):D412-6. doi: 10.1093/nar/gkn760. Epub 2008 Oct 21.

4.

STRING 7--recent developments in the integration and prediction of protein interactions.

von Mering C, Jensen LJ, Kuhn M, Chaffron S, Doerks T, Krüger B, Snel B, Bork P.

Nucleic Acids Res. 2007 Jan;35(Database issue):D358-62. Epub 2006 Nov 10.

5.

STRING v10: protein-protein interaction networks, integrated over the tree of life.

Szklarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, Huerta-Cepas J, Simonovic M, Roth A, Santos A, Tsafou KP, Kuhn M, Bork P, Jensen LJ, von Mering C.

Nucleic Acids Res. 2015 Jan;43(Database issue):D447-52. doi: 10.1093/nar/gku1003. Epub 2014 Oct 28.

6.

A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.

7.

SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803.

Kim WY, Kang S, Kim BC, Oh J, Cho S, Bhak J, Choi JS.

BMC Bioinformatics. 2008;9 Suppl 1:S20. doi: 10.1186/1471-2105-9-S1-S20.

8.
9.

Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service.

Kim JG, Park D, Kim BC, Cho SW, Kim YT, Park YJ, Cho HJ, Park H, Kim KB, Yoon KO, Park SJ, Lee BM, Bhak J.

BMC Bioinformatics. 2008 Jan 24;9:41. doi: 10.1186/1471-2105-9-41.

10.

SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.

Teyra J, Doms A, Schroeder M, Pisabarro MT.

BMC Bioinformatics. 2006 Mar 2;7:104.

11.

Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology.

Lin CY, Chen SH, Cho CS, Chen CL, Lin FK, Lin CH, Chen PY, Lo CZ, Hsiung CA.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S18.

12.

Bacteriome.org--an integrated protein interaction database for E. coli.

Su C, Peregrin-Alvarez JM, Butland G, Phanse S, Fong V, Emili A, Parkinson J.

Nucleic Acids Res. 2008 Jan;36(Database issue):D632-6. Epub 2007 Oct 16.

13.

STRING: known and predicted protein-protein associations, integrated and transferred across organisms.

von Mering C, Jensen LJ, Snel B, Hooper SD, Krupp M, Foglierini M, Jouffre N, Huynen MA, Bork P.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D433-7.

14.

HAPPI: an online database of comprehensive human annotated and predicted protein interactions.

Chen JY, Mamidipalli S, Huan T.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S16. doi: 10.1186/1471-2164-10-S1-S16.

15.

UniHI: an entry gate to the human protein interactome.

Chaurasia G, Iqbal Y, Hänig C, Herzel H, Wanker EE, Futschik ME.

Nucleic Acids Res. 2007 Jan;35(Database issue):D590-4. Epub 2006 Dec 7.

16.

DIMA 2.0--predicted and known domain interactions.

Pagel P, Oesterheld M, Tovstukhina O, Strack N, Stümpflen V, Frishman D.

Nucleic Acids Res. 2008 Jan;36(Database issue):D651-5. Epub 2007 Nov 13.

17.

The integration and annotation of the human interactome in the UniHI Database.

Chaurasia G, Futschik M.

Methods Mol Biol. 2012;812:175-88. doi: 10.1007/978-1-61779-455-1_10.

PMID:
22218860
18.

Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets.

Zhou H, Wong L.

BMC Genomics. 2011 Nov 30;12 Suppl 3:S20. doi: 10.1186/1471-2164-12-S3-S20. Epub 2011 Nov 30.

19.

INTEGRATOR: interactive graphical search of large protein interactomes over the Web.

Chang AN, McDermott J, Frazier Z, Guerquin M, Samudrala R.

BMC Bioinformatics. 2006 Mar 16;7:146.

20.

HPID: the Human Protein Interaction Database.

Han K, Park B, Kim H, Hong J, Park J.

Bioinformatics. 2004 Oct 12;20(15):2466-70. Epub 2004 Apr 29.

PMID:
15117749

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