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Items: 1 to 20 of 71

1.

Microbial community resemblance methods differ in their ability to detect biologically relevant patterns.

Kuczynski J, Liu Z, Lozupone C, McDonald D, Fierer N, Knight R.

Nat Methods. 2010 Oct;7(10):813-9. doi: 10.1038/nmeth.1499.

2.
3.

Species divergence and the measurement of microbial diversity.

Lozupone CA, Knight R.

FEMS Microbiol Rev. 2008 Jul;32(4):557-78. doi: 10.1111/j.1574-6976.2008.00111.x. Review.

4.

Rethinking microbial diversity analysis in the high throughput sequencing era.

Lemos LN, Fulthorpe RR, Triplett EW, Roesch LF.

J Microbiol Methods. 2011 Jul;86(1):42-51. doi: 10.1016/j.mimet.2011.03.014.

5.

Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments.

Hollister EB, Engledow AS, Hammett AJ, Provin TL, Wilkinson HH, Gentry TJ.

ISME J. 2010 Jun;4(6):829-38. doi: 10.1038/ismej.2010.3.

PMID:
20130657
6.

Does urbanization shape bacterial community composition in urban park soils? A case study in 16 representative Chinese cities based on the pyrosequencing method.

Xu HJ, Li S, Su JQ, Nie S, Gibson V, Li H, Zhu YG.

FEMS Microbiol Ecol. 2014 Jan;87(1):182-92. doi: 10.1111/1574-6941.12215.

7.

A survey of the methods for the characterization of microbial consortia and communities.

Spiegelman D, Whissell G, Greer CW.

Can J Microbiol. 2005 May;51(5):355-86. Review.

PMID:
16088332
8.

Evidence from GC-TRFLP that bacterial communities in soil are lognormally distributed.

Doroghazi JR, Buckley DH.

PLoS One. 2008 Aug 6;3(8):e2910. doi: 10.1371/journal.pone.0002910.

9.
10.

Altitudinal distribution patterns of soil bacterial and archaeal communities along mt. Shegyla on the Tibetan Plateau.

Wang JT, Cao P, Hu HW, Li J, Han LL, Zhang LM, Zheng YM, He JZ.

Microb Ecol. 2015 Jan;69(1):135-45. doi: 10.1007/s00248-014-0465-7.

PMID:
25074792
11.

Profiling microbial community structures across six large oilfields in China and the potential role of dominant microorganisms in bioremediation.

Sun W, Li J, Jiang L, Sun Z, Fu M, Peng X.

Appl Microbiol Biotechnol. 2015 Oct;99(20):8751-64. doi: 10.1007/s00253-015-6748-1.

PMID:
26078113
12.

Microbial community succession and bacterial diversity in soils during 77,000 years of ecosystem development.

Tarlera S, Jangid K, Ivester AH, Whitman WB, Williams MA.

FEMS Microbiol Ecol. 2008 Apr;64(1):129-40. doi: 10.1111/j.1574-6941.2008.00444.x.

13.

Rice to vegetables: short- versus long-term impact of land-use change on the indigenous soil microbial community.

Sun B, Dong ZX, Zhang XX, Li Y, Cao H, Cui ZL.

Microb Ecol. 2011 Aug;62(2):474-85. doi: 10.1007/s00248-011-9807-x.

PMID:
21298263
14.

Microbial community diversity in the profile of an agricultural soil in northern China.

Zhou J, Guo W, Wang R, Han X, Wang Q.

J Environ Sci (China). 2008;20(8):981-8.

PMID:
18817079
16.

Pyrosequencing revealed highly microbial phylogenetic diversity in ferromanganese nodules from farmland.

Hu M, Li F, Lei J, Fang Y, Tong H, Wu W, Liu C.

Environ Sci Process Impacts. 2015 Jan;17(1):213-24. doi: 10.1039/c4em00407h.

PMID:
25503395
17.

Serial analysis of rRNA genes and the unexpected dominance of rare members of microbial communities.

Ashby MN, Rine J, Mongodin EF, Nelson KE, Dimster-Denk D.

Appl Environ Microbiol. 2007 Jul;73(14):4532-42.

18.

Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska.

Deng J, Gu Y, Zhang J, Xue K, Qin Y, Yuan M, Yin H, He Z, Wu L, Schuur EA, Tiedje JM, Zhou J.

Mol Ecol. 2015 Jan;24(1):222-34. doi: 10.1111/mec.13015.

PMID:
25424441
19.

Bacterial Community Diversity in Soil Under two Tillage Practices as Determined by Pyrosequencing.

Sengupta A, Dick WA.

Microb Ecol. 2015 Oct;70(3):853-9. doi: 10.1007/s00248-015-0609-4.

PMID:
25930203
20.

Links between plant community composition, soil organic matter quality and microbial communities in contrasting tundra habitats.

Eskelinen A, Stark S, Männistö M.

Oecologia. 2009 Aug;161(1):113-23. doi: 10.1007/s00442-009-1362-5.

PMID:
19452173

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