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Items: 1 to 20 of 71

1.

Specialized compartments of cardiac nuclei exhibit distinct proteomic anatomy.

Franklin S, Zhang MJ, Chen H, Paulsson AK, Mitchell-Jordan SA, Li Y, Ping P, Vondriska TM.

Mol Cell Proteomics. 2011 Jan;10(1):M110.000703. doi: 10.1074/mcp.M110.000703. Epub 2010 Aug 31.

2.

Orthogonal separation techniques for the characterization of the yeast nuclear proteome.

Gauci S, Veenhoff LM, Heck AJ, Krijgsveld J.

J Proteome Res. 2009 Jul;8(7):3451-63. doi: 10.1021/pr9000948.

PMID:
19453177
3.

Proteomic and bioinformatic analysis of a nuclear intrinsically disordered proteome.

Skupien-Rabian B, Jankowska U, Swiderska B, Lukasiewicz S, Ryszawy D, Dziedzicka-Wasylewska M, Kedracka-Krok S.

J Proteomics. 2016 Jan 1;130:76-84. doi: 10.1016/j.jprot.2015.09.004. Epub 2015 Sep 12.

PMID:
26376097
4.

Acetylation-dependent chromatin reorganization by BRDT, a testis-specific bromodomain-containing protein.

Pivot-Pajot C, Caron C, Govin J, Vion A, Rousseaux S, Khochbin S.

Mol Cell Biol. 2003 Aug;23(15):5354-65.

5.

Comprehensive mapping of post-translational modifications on synaptic, nuclear, and histone proteins in the adult mouse brain.

Tweedie-Cullen RY, Reck JM, Mansuy IM.

J Proteome Res. 2009 Nov;8(11):4966-82. doi: 10.1021/pr9003739.

PMID:
19737024
6.

Proteome analysis of human nuclear insoluble fractions.

Takata H, Nishijima H, Ogura S, Sakaguchi T, Bubulya PA, Mochizuki T, Shibahara K.

Genes Cells. 2009 Aug;14(8):975-90. doi: 10.1111/j.1365-2443.2009.01324.x.

7.

Shot-gun proteomic analysis of mitochondrial D-loop DNA binding proteins: identification of mitochondrial histones.

Choi YS, Hoon Jeong J, Min HK, Jung HJ, Hwang D, Lee SW, Kim Pak Y.

Mol Biosyst. 2011 May;7(5):1523-36. doi: 10.1039/c0mb00277a. Epub 2011 Feb 28.

PMID:
21359316
8.

The nuclear proteome of the green alga Chlamydomonas reinhardtii.

Winck FV, Riaño-Pachón DM, Sommer F, Rupprecht J, Mueller-Roeber B.

Proteomics. 2012 Jan;12(1):95-100. doi: 10.1002/pmic.201000782. Epub 2011 Dec 9.

PMID:
22065562
9.

Investigating the dynamic nature of the interactions between nuclear proteins and histones upon DNA damage using an immobilized peptide chemical proteomics approach.

Dirksen EH, Pinkse MW, Rijkers DT, Cloos J, Liskamp RM, Slijper M, Heck AJ.

J Proteome Res. 2006 Sep;5(9):2380-8.

PMID:
16944950
10.

Quantitative analysis of chromatin proteomes in disease.

Monte E, Chen H, Kolmakova M, Parvatiyar M, Vondriska TM, Franklin S.

J Vis Exp. 2012 Dec 28;(70). pii: 4294. doi: 10.3791/4294.

11.

Isolation of nuclear proteins.

Calikowski TT, Meier I.

Methods Mol Biol. 2006;323:393-402.

PMID:
16739594
12.

The transcriptional regulator CBP has defined spatial associations within interphase nuclei.

McManus KJ, Stephens DA, Adams NM, Islam SA, Freemont PS, Hendzel MJ.

PLoS Comput Biol. 2006 Oct 20;2(10):e139. Epub 2006 Sep 8.

13.

A mighty small heart: the cardiac proteome of adult Drosophila melanogaster.

Cammarato A, Ahrens CH, Alayari NN, Qeli E, Rucker J, Reedy MC, Zmasek CM, Gucek M, Cole RN, Van Eyk JE, Bodmer R, O'Rourke B, Bernstein SI, Foster DB.

PLoS One. 2011 Apr 25;6(4):e18497. doi: 10.1371/journal.pone.0018497.

14.

High-yield isolation and subcellular proteomic characterization of nuclear and subnuclear structures from trypanosomes.

DeGrasse JA, Chait BT, Field MC, Rout MP.

Methods Mol Biol. 2008;463:77-92. doi: 10.1007/978-1-59745-406-3_6.

PMID:
18951162
15.
16.

The proteomic investigation of chromatin functional domains reveals novel synergisms among distinct heterochromatin components.

Soldi M, Bonaldi T.

Mol Cell Proteomics. 2013 Mar;12(3):764-80. doi: 10.1074/mcp.M112.024307. Epub 2013 Jan 14.

17.

Proteome-Wide Identification of Lysine Succinylation in the Proteins of Tomato (Solanum lycopersicum).

Jin W, Wu F.

PLoS One. 2016 Feb 1;11(2):e0147586. doi: 10.1371/journal.pone.0147586. eCollection 2016 Feb 1.

18.

Improved proteomic analysis of nuclear proteins, as exemplified by the comparison of two myeloid cell lines nuclear proteomes.

Lelong C, Chevallet M, Diemer H, Luche S, Van Dorsselaer A, Rabilloud T.

J Proteomics. 2012 Dec 21;77:577-602. doi: 10.1016/j.jprot.2012.09.034. Epub 2012 Oct 10.

PMID:
23063611
19.

PPE38 of Mycobacterium marinum triggers the cross-talk of multiple pathways involved in the host response, as revealed by subcellular quantitative proteomics.

Wang H, Dong D, Tang S, Chen X, Gao Q.

J Proteome Res. 2013 May 3;12(5):2055-66. doi: 10.1021/pr301017e. Epub 2013 Apr 8.

20.

Shotgun proteome analysis utilising mixed mode (reversed phase-anion exchange chromatography) in conjunction with reversed phase liquid chromatography mass spectrometry analysis.

Phillips HL, Williamson JC, van Elburg KA, Snijders AP, Wright PC, Dickman MJ.

Proteomics. 2010 Aug;10(16):2950-60. doi: 10.1002/pmic.200900669.

PMID:
20662100

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