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Items: 1 to 20 of 66

1.

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions.

Reeder J, Knight R.

Nat Methods. 2010 Sep;7(9):668-9. doi: 10.1038/nmeth0910-668b. No abstract available.

2.

Gene-centric metagenomics analysis of feline intestinal microbiome using 454 junior pyrosequencing.

Tun HM, Brar MS, Khin N, Jun L, Hui RK, Dowd SE, Leung FC.

J Microbiol Methods. 2012 Mar;88(3):369-76. doi: 10.1016/j.mimet.2012.01.001. Epub 2012 Jan 12.

PMID:
22265636
3.

Tag-encoded FLX amplicon pyrosequencing for the elucidation of microbial and functional gene diversity in any environment.

Sun Y, Wolcott RD, Dowd SE.

Methods Mol Biol. 2011;733:129-41. doi: 10.1007/978-1-61779-089-8_9.

PMID:
21431767
4.

Changes in the intestinal microbiota from adulthood through to old age.

O'Toole PW.

Clin Microbiol Infect. 2012 Jul;18 Suppl 4:44-6. doi: 10.1111/j.1469-0691.2012.03867.x.

5.

Denoising PCR-amplified metagenome data.

Rosen MJ, Callahan BJ, Fisher DS, Holmes SP.

BMC Bioinformatics. 2012 Oct 31;13:283. doi: 10.1186/1471-2105-13-283.

6.

NoDe: a fast error-correction algorithm for pyrosequencing amplicon reads.

Mysara M, Leys N, Raes J, Monsieurs P.

BMC Bioinformatics. 2015 Mar 15;16:88. doi: 10.1186/s12859-015-0520-5.

7.

Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing.

Nam YD, Jung MJ, Roh SW, Kim MS, Bae JW.

PLoS One. 2011;6(7):e22109. doi: 10.1371/journal.pone.0022109. Epub 2011 Jul 29.

8.

Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome.

Saulnier DM, Riehle K, Mistretta TA, Diaz MA, Mandal D, Raza S, Weidler EM, Qin X, Coarfa C, Milosavljevic A, Petrosino JF, Highlander S, Gibbs R, Lynch SV, Shulman RJ, Versalovic J.

Gastroenterology. 2011 Nov;141(5):1782-91. doi: 10.1053/j.gastro.2011.06.072. Epub 2011 Jul 8.

9.

Annotation of metagenome short reads using proxygenes.

Dalevi D, Ivanova NN, Mavromatis K, Hooper SD, Szeto E, Hugenholtz P, Kyrpides NC, Markowitz VM.

Bioinformatics. 2008 Aug 15;24(16):i7-13. doi: 10.1093/bioinformatics/btn276.

PMID:
18689842
10.

The human gut microbiome: the ghost in the machine.

Feeney A, Sleator RD.

Future Microbiol. 2012 Nov;7(11):1235-7. doi: 10.2217/fmb.12.105. No abstract available.

11.

Gut metagenome and spondyloarthritis.

Schaeverbeke T, Truchetet ME, Richez C.

Joint Bone Spine. 2013 Jul;80(4):349-52. doi: 10.1016/j.jbspin.2013.02.005. Epub 2013 Jun 24. No abstract available.

PMID:
23806346
12.

Human oral, gut, and plaque microbiota in patients with atherosclerosis.

Koren O, Spor A, Felin J, Fåk F, Stombaugh J, Tremaroli V, Behre CJ, Knight R, Fagerberg B, Ley RE, Bäckhed F.

Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4592-8. doi: 10.1073/pnas.1011383107. Epub 2010 Oct 11.

13.

Gastrointestinal microbiology enters the metagenomics era.

Frank DN, Pace NR.

Curr Opin Gastroenterol. 2008 Jan;24(1):4-10. Review.

PMID:
18043225
14.

Mining biomass-degrading genes through Illumina-based de novo sequencing and metagenomic analysis of free-living bacteria in the gut of the lower termite Coptotermes gestroi harvested in Vietnam.

Do TH, Nguyen TT, Nguyen TN, Le QG, Nguyen C, Kimura K, Truong NH.

J Biosci Bioeng. 2014 Dec;118(6):665-71. doi: 10.1016/j.jbiosc.2014.05.010. Epub 2014 Jun 11.

PMID:
24928651
15.

The gut microbiota of a patient with resistant tuberculosis is more comprehensively studied by culturomics than by metagenomics.

Dubourg G, Lagier JC, Armougom F, Robert C, Hamad I, Brouqui P, Raoult D.

Eur J Clin Microbiol Infect Dis. 2013 May;32(5):637-45. doi: 10.1007/s10096-012-1787-3. Epub 2013 Jan 6.

PMID:
23291779
16.
17.

Pyrosequencing-based analysis of the mucosal microbiota in healthy individuals reveals ubiquitous bacterial groups and micro-heterogeneity.

Hong PY, Croix JA, Greenberg E, Gaskins HR, Mackie RI.

PLoS One. 2011;6(9):e25042. doi: 10.1371/journal.pone.0025042. Epub 2011 Sep 22.

18.

Analysis of bacterial xylose isomerase gene diversity using gene-targeted metagenomics.

Nurdiani D, Ito M, Maruyama T, Terahara T, Mori T, Ugawa S, Takeyama H.

J Biosci Bioeng. 2015 Aug;120(2):174-80. doi: 10.1016/j.jbiosc.2014.12.022. Epub 2015 Feb 3.

PMID:
25656071
19.

Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing.

Kröber M, Bekel T, Diaz NN, Goesmann A, Jaenicke S, Krause L, Miller D, Runte KJ, Viehöver P, Pühler A, Schlüter A.

J Biotechnol. 2009 Jun 1;142(1):38-49. doi: 10.1016/j.jbiotec.2009.02.010. Epub 2009 Feb 27.

PMID:
19480946
20.

Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome.

Jones BV, Sun F, Marchesi JR.

BMC Genomics. 2010 Jan 19;11:46. doi: 10.1186/1471-2164-11-46.

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