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Items: 1 to 20 of 275

1.

Squeezing protein shells: how continuum elastic models, molecular dynamics simulations, and experiments coalesce at the nanoscale.

Roos WH, Gibbons MM, Arkhipov A, Uetrecht C, Watts NR, Wingfield PT, Steven AC, Heck AJ, Schulten K, Klug WS, Wuite GJ.

Biophys J. 2010 Aug 9;99(4):1175-81. doi: 10.1016/j.bpj.2010.05.033.

2.

Nonlinear finite-element analysis of nanoindentation of viral capsids.

Gibbons MM, Klug WS.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Mar;75(3 Pt 1):031901. Epub 2007 Mar 1.

PMID:
17500720
3.

Three-dimensional simulation of nanoindentation response of viral capsids. Shape and size effects.

Ahadi A, Colomo J, Evilevitch A.

J Phys Chem B. 2009 Mar 19;113(11):3370-8. doi: 10.1021/jp8089352.

PMID:
19243104
4.

Influence of nonuniform geometry on nanoindentation of viral capsids.

Gibbons MM, Klug WS.

Biophys J. 2008 Oct;95(8):3640-9. doi: 10.1529/biophysj.108.136176. Epub 2008 Jul 11.

5.

Mechanical deformation of spherical viruses with icosahedral symmetry.

Vliegenthart GA, Gompper G.

Biophys J. 2006 Aug 1;91(3):834-41. Epub 2006 May 5.

6.

Modeling and simulation of the mechanical response from nanoindentation test of DNA-filled viral capsids.

Ahadi A, Johansson D, Evilevitch A.

J Biol Phys. 2013 Mar;39(2):183-99. doi: 10.1007/s10867-013-9297-9. Epub 2013 Mar 2.

7.

Viral capsid equilibrium dynamics reveals nonuniform elastic properties.

May ER, Aggarwal A, Klug WS, Brooks CL 3rd.

Biophys J. 2011 Jun 8;100(11):L59-61. doi: 10.1016/j.bpj.2011.04.026.

8.

Elucidating the mechanism behind irreversible deformation of viral capsids.

Arkhipov A, Roos WH, Wuite GJ, Schulten K.

Biophys J. 2009 Oct 7;97(7):2061-9. doi: 10.1016/j.bpj.2009.07.039.

9.

Nonuniform elastic properties of macromolecules and effect of prestrain on their continuum nature.

Aggarwal A, May ER, Brooks CL 3rd, Klug WS.

Phys Rev E. 2016 Jan;93(1):012417. doi: 10.1103/PhysRevE.93.012417. Epub 2016 Jan 28.

PMID:
26871111
10.

Nanoindentation studies of full and empty viral capsids and the effects of capsid protein mutations on elasticity and strength.

Michel JP, Ivanovska IL, Gibbons MM, Klug WS, Knobler CM, Wuite GJ, Schmidt CF.

Proc Natl Acad Sci U S A. 2006 Apr 18;103(16):6184-9. Epub 2006 Apr 10.

11.

Computational mechanics of viral capsids.

Gibbons MM, Perotti LE, Klug WS.

Methods Mol Biol. 2015;1252:139-88. doi: 10.1007/978-1-4939-2131-7_12.

PMID:
25358779
12.

The interplay between mechanics and stability of viral cages.

Hernando-Pérez M, Pascual E, Aznar M, Ionel A, Castón JR, Luque A, Carrascosa JL, Reguera D, de Pablo PJ.

Nanoscale. 2014 Mar 7;6(5):2702-9. doi: 10.1039/c3nr05763a. Epub 2014 Jan 23.

PMID:
24452242
13.

Unlocking internal prestress from protein nanoshells.

Klug WS, Roos WH, Wuite GJ.

Phys Rev Lett. 2012 Oct 19;109(16):168104. Epub 2012 Oct 19.

PMID:
23215136
14.

Nanoindentation of virus capsids in a molecular model.

Cieplak M, Robbins MO.

J Chem Phys. 2010 Jan 7;132(1):015101. doi: 10.1063/1.3276287.

PMID:
20078182
15.

Determination of viral capsid elastic properties from equilibrium thermal fluctuations.

May ER, Brooks CL 3rd.

Phys Rev Lett. 2011 May 6;106(18):188101. Epub 2011 May 2.

16.

Elasticity theory and shape transitions of viral shells.

Nguyen TT, Bruinsma RF, Gelbart WM.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Nov;72(5 Pt 1):051923. Epub 2005 Nov 21.

PMID:
16383661
17.

Built-in mechanical stress in viral shells.

Carrasco C, Luque A, Hernando-Pérez M, Miranda R, Carrascosa JL, Serena PA, de Ridder M, Raman A, Gómez-Herrero J, Schaap IA, Reguera D, de Pablo PJ.

Biophys J. 2011 Feb 16;100(4):1100-8. doi: 10.1016/j.bpj.2011.01.008.

18.

On the morphology of viral capsids: elastic properties and buckling transitions.

May ER, Brooks CL 3rd.

J Phys Chem B. 2012 Jul 26;116(29):8604-9. doi: 10.1021/jp300005g. Epub 2012 Mar 27.

19.

Deformation and collapse of microtubules on the nanometer scale.

de Pablo PJ, Schaap IA, MacKintosh FC, Schmidt CF.

Phys Rev Lett. 2003 Aug 29;91(9):098101. Epub 2003 Aug 27.

PMID:
14525215
20.

Failure of viral shells.

Klug WS, Bruinsma RF, Michel JP, Knobler CM, Ivanovska IL, Schmidt CF, Wuite GJ.

Phys Rev Lett. 2006 Dec 1;97(22):228101. Epub 2006 Nov 27.

PMID:
17155845

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