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Items: 1 to 20 of 100

1.

Lineage-specific expansion of DNA-binding transcription factor families.

Charoensawan V, Wilson D, Teichmann SA.

Trends Genet. 2010 Sep;26(9):388-93. doi: 10.1016/j.tig.2010.06.004. Epub 2010 Jul 31.

2.

Genomic repertoires of DNA-binding transcription factors across the tree of life.

Charoensawan V, Wilson D, Teichmann SA.

Nucleic Acids Res. 2010 Nov;38(21):7364-77. doi: 10.1093/nar/gkq617. Epub 2010 Jul 30. Review.

3.

Genome-wide survey of transcription factors in prokaryotes reveals many bacteria-specific families not found in archaea.

Minezaki Y, Homma K, Nishikawa K.

DNA Res. 2005;12(5):269-80. Epub 2006 Jan 10.

PMID:
16769689
4.
5.

DNA-binding domains of plant-specific transcription factors: structure, function, and evolution.

Yamasaki K, Kigawa T, Seki M, Shinozaki K, Yokoyama S.

Trends Plant Sci. 2013 May;18(5):267-76. doi: 10.1016/j.tplants.2012.09.001. Epub 2012 Oct 3. Review.

PMID:
23040085
6.

Sequence features of DNA binding sites reveal structural class of associated transcription factor.

Narlikar L, Hartemink AJ.

Bioinformatics. 2006 Jan 15;22(2):157-63. Epub 2005 Nov 2.

PMID:
16267080
7.

Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming.

Soufi A, Garcia MF, Jaroszewicz A, Osman N, Pellegrini M, Zaret KS.

Cell. 2015 Apr 23;161(3):555-568. doi: 10.1016/j.cell.2015.03.017. Epub 2015 Apr 16.

8.

The natural history of the WRKY-GCM1 zinc fingers and the relationship between transcription factors and transposons.

Babu MM, Iyer LM, Balaji S, Aravind L.

Nucleic Acids Res. 2006;34(22):6505-20. Epub 2006 Nov 27.

9.
10.

Human transcription factors contain a high fraction of intrinsically disordered regions essential for transcriptional regulation.

Minezaki Y, Homma K, Kinjo AR, Nishikawa K.

J Mol Biol. 2006 Jun 16;359(4):1137-49. Epub 2006 Apr 25. Erratum in: J Mol Biol. 2006 Oct 13;363(1):309.

PMID:
16697407
11.

TFClass: a classification of human transcription factors and their rodent orthologs.

Wingender E, Schoeps T, Haubrock M, Dönitz J.

Nucleic Acids Res. 2015 Jan;43(Database issue):D97-102. doi: 10.1093/nar/gku1064. Epub 2014 Oct 31.

12.

Structures and evolutionary origins of plant-specific transcription factor DNA-binding domains.

Yamasaki K, Kigawa T, Inoue M, Watanabe S, Tateno M, Seki M, Shinozaki K, Yokoyama S.

Plant Physiol Biochem. 2008 Mar;46(3):394-401. doi: 10.1016/j.plaphy.2007.12.015. Epub 2008 Jan 3. Review.

PMID:
18272381
13.

Low resolution structures of the retinoid X receptor DNA-binding and ligand-binding domains revealed by synchrotron X-ray solution scattering.

Fischer H, Dias SM, Santos MA, Alves AC, Zanchin N, Craievich AF, Apriletti JW, Baxter JD, Webb P, Neves FA, Ribeiro RC, Polikarpov I.

J Biol Chem. 2003 May 2;278(18):16030-8. Epub 2003 Jan 17.

14.

DBD--taxonomically broad transcription factor predictions: new content and functionality.

Wilson D, Charoensawan V, Kummerfeld SK, Teichmann SA.

Nucleic Acids Res. 2008 Jan;36(Database issue):D88-92. Epub 2007 Dec 11.

15.
16.

Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea.

Pérez-Rueda E, Collado-Vides J, Segovia L.

Comput Biol Chem. 2004 Dec;28(5-6):341-50.

PMID:
15556475
17.

The repertoire of DNA-binding transcription factors in prokaryotes: functional and evolutionary lessons.

Perez-Rueda E, Martinez-Nuñez MA.

Sci Prog. 2012;95(Pt 3):315-29. Review.

PMID:
23094327
18.

A catalogue of eukaryotic transcription factor types, their evolutionary origin, and species distribution.

Weirauch MT, Hughes TR.

Subcell Biochem. 2011;52:25-73. doi: 10.1007/978-90-481-9069-0_3.

PMID:
21557078
19.
20.

Sequence-specific deoxyribonucleic acid (DNA) recognition by steroidogenic factor 1: a helix at the carboxy terminus of the DNA binding domain is necessary for complex stability.

Little TH, Zhang Y, Matulis CK, Weck J, Zhang Z, Ramachandran A, Mayo KE, Radhakrishnan I.

Mol Endocrinol. 2006 Apr;20(4):831-43. Epub 2005 Dec 8.

PMID:
16339274

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