Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 189

1.

Genome-scale DNA methylation analysis.

Fouse SD, Nagarajan RO, Costello JF.

Epigenomics. 2010 Feb;2(1):105-17. doi: 10.2217/epi.09.35. Review.

2.

Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods.

Stevens M, Cheng JB, Li D, Xie M, Hong C, Maire CL, Ligon KL, Hirst M, Marra MA, Costello JF, Wang T.

Genome Res. 2013 Sep;23(9):1541-53. doi: 10.1101/gr.152231.112. Epub 2013 Jun 26.

3.

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, Echipare L, O'Geen H, Lister R, Pelizzola M, Xi Y, Epstein CB, Bernstein BE, Hawkins RD, Ren B, Chung WY, Gu H, Bock C, Gnirke A, Zhang MQ, Haussler D, Ecker JR, Li W, Farnham PJ, Waterland RA, Meissner A, Marra MA, Hirst M, Milosavljevic A, Costello JF.

Nat Biotechnol. 2010 Oct;28(10):1097-105. doi: 10.1038/nbt.1682. Epub 2010 Sep 19.

4.

A comparison of the whole genome approach of MeDIP-seq to the targeted approach of the Infinium HumanMethylation450 BeadChip(®) for methylome profiling.

Clark C, Palta P, Joyce CJ, Scott C, Grundberg E, Deloukas P, Palotie A, Coffey AJ.

PLoS One. 2012;7(11):e50233. doi: 10.1371/journal.pone.0050233. Epub 2012 Nov 29.

5.

Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation.

Li D, Zhang B, Xing X, Wang T.

Methods. 2015 Jan 15;72:29-40. doi: 10.1016/j.ymeth.2014.10.032. Epub 2014 Nov 6.

6.

Monitoring methylation changes in cancer.

Beier V, Mund C, Hoheisel JD.

Adv Biochem Eng Biotechnol. 2007;104:1-11. Review.

PMID:
17290816
7.

High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing.

Hodges E, Smith AD, Kendall J, Xuan Z, Ravi K, Rooks M, Zhang MQ, Ye K, Bhattacharjee A, Brizuela L, McCombie WR, Wigler M, Hannon GJ, Hicks JB.

Genome Res. 2009 Sep;19(9):1593-605. doi: 10.1101/gr.095190.109. Epub 2009 Jul 6.

8.

Analyzing the cancer methylome through targeted bisulfite sequencing.

Lee EJ, Luo J, Wilson JM, Shi H.

Cancer Lett. 2013 Nov 1;340(2):171-8. doi: 10.1016/j.canlet.2012.10.040. Epub 2012 Nov 28. Review.

9.

Genome wide analysis of acute myeloid leukemia reveal leukemia specific methylome and subtype specific hypomethylation of repeats.

Saied MH, Marzec J, Khalid S, Smith P, Down TA, Rakyan VK, Molloy G, Raghavan M, Debernardi S, Young BD.

PLoS One. 2012;7(3):e33213. doi: 10.1371/journal.pone.0033213. Epub 2012 Mar 29.

10.

Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation.

Robinson MD, Stirzaker C, Statham AL, Coolen MW, Song JZ, Nair SS, Strbenac D, Speed TP, Clark SJ.

Genome Res. 2010 Dec;20(12):1719-29. doi: 10.1101/gr.110601.110. Epub 2010 Nov 2. Erratum in: Genome Res. 2011 Jan;21(1):146.

11.

Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis.

Sun Z, Cunningham J, Slager S, Kocher JP.

Epigenomics. 2015 Aug;7(5):813-28. doi: 10.2217/epi.15.21. Epub 2015 Sep 14. Review.

12.

DNA methylation profiling: comparison of genome-wide sequencing methods and the Infinium Human Methylation 450 Bead Chip.

Walker DL, Bhagwate AV, Baheti S, Smalley RL, Hilker CA, Sun Z, Cunningham JM.

Epigenomics. 2015;7(8):1287-302. doi: 10.2217/EPI.15.64. Epub 2015 Jul 20.

PMID:
26192535
13.

MeDIP-HMM: genome-wide identification of distinct DNA methylation states from high-density tiling arrays.

Seifert M, Cortijo S, Colomé-Tatché M, Johannes F, Roudier F, Colot V.

Bioinformatics. 2012 Nov 15;28(22):2930-9. doi: 10.1093/bioinformatics/bts562. Epub 2012 Sep 17.

PMID:
22989518
14.

Mapping the zebrafish brain methylome using reduced representation bisulfite sequencing.

Chatterjee A, Ozaki Y, Stockwell PA, Horsfield JA, Morison IM, Nakagawa S.

Epigenetics. 2013 Sep;8(9):979-89. doi: 10.4161/epi.25797. Epub 2013 Jul 24.

15.

Whole genome DNA methylation analysis based on high throughput sequencing technology.

Li N, Ye M, Li Y, Yan Z, Butcher LM, Sun J, Han X, Chen Q, Zhang X, Wang J.

Methods. 2010 Nov;52(3):203-12. doi: 10.1016/j.ymeth.2010.04.009. Epub 2010 Apr 27.

PMID:
20430099
16.

Assessment of methylation level prediction accuracy in methyl-DNA immunoprecipitation and sodium bisulfite based microarray platforms.

Rajendram R, Ferreira JC, Grafodatskaya D, Choufani S, Chiang T, Pu S, Butcher DT, Wodak SJ, Weksberg R.

Epigenetics. 2011 Apr;6(4):410-5. Epub 2011 Apr 1.

PMID:
21343703
17.

Systematic evaluation of genome-wide methylated DNA enrichment using a CpG island array.

Yang L, Zhang K, Dai W, He X, Zhao Q, Wang J, Sun ZS.

BMC Genomics. 2011 Jan 6;12:10. doi: 10.1186/1471-2164-12-10.

18.

Methylation-specific oligonucleotide microarray: a new potential for high-throughput methylation analysis.

Gitan RS, Shi H, Chen CM, Yan PS, Huang TH.

Genome Res. 2002 Jan;12(1):158-64.

19.

High density DNA methylation array with single CpG site resolution.

Bibikova M, Barnes B, Tsan C, Ho V, Klotzle B, Le JM, Delano D, Zhang L, Schroth GP, Gunderson KL, Fan JB, Shen R.

Genomics. 2011 Oct;98(4):288-95. doi: 10.1016/j.ygeno.2011.07.007. Epub 2011 Aug 2.

20.

Whole-genome DNA methylation in skin lesions from patients with psoriasis vulgaris.

Zhang P, Zhao M, Liang G, Yin G, Huang D, Su F, Zhai H, Wang L, Su Y, Lu Q.

J Autoimmun. 2013 Mar;41:17-24. doi: 10.1016/j.jaut.2013.01.001. Epub 2013 Jan 29.

PMID:
23369618

Supplemental Content

Support Center