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Items: 1 to 20 of 155

1.

PTMScout, a Web resource for analysis of high throughput post-translational proteomics studies.

Naegle KM, Gymrek M, Joughin BA, Wagner JP, Welsch RE, Yaffe MB, Lauffenburger DA, White FM.

Mol Cell Proteomics. 2010 Nov;9(11):2558-70. doi: 10.1074/mcp.M110.001206. Epub 2010 Jul 14.

2.

ProteomeScout: a repository and analysis resource for post-translational modifications and proteins.

Matlock MK, Holehouse AS, Naegle KM.

Nucleic Acids Res. 2015 Jan;43(Database issue):D521-30. doi: 10.1093/nar/gku1154. Epub 2014 Nov 20.

3.

PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications.

Chaudhuri R, Sadrieh A, Hoffman NJ, Parker BL, Humphrey SJ, Stöckli J, Hill AP, James DE, Yang JY.

BMC Genomics. 2015 Aug 19;16:617. doi: 10.1186/s12864-015-1820-x.

4.

SysPTM: a systematic resource for proteomic research on post-translational modifications.

Li H, Xing X, Ding G, Li Q, Wang C, Xie L, Zeng R, Li Y.

Mol Cell Proteomics. 2009 Aug;8(8):1839-49. doi: 10.1074/mcp.M900030-MCP200. Epub 2009 Apr 14.

5.

MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

BMC Bioinformatics. 2006 Oct 17;7:459.

6.

STRAP PTM: Software Tool for Rapid Annotation and Differential Comparison of Protein Post-Translational Modifications.

Spencer JL, Bhatia VN, Whelan SA, Costello CE, McComb ME.

Curr Protoc Bioinformatics. 2013 Dec;44:13.22.1-36. doi: 10.1002/0471250953.bi1322s44.

7.

dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins.

Huang KY, Su MG, Kao HJ, Hsieh YC, Jhong JH, Cheng KH, Huang HD, Lee TY.

Nucleic Acids Res. 2016 Jan 4;44(D1):D435-46. doi: 10.1093/nar/gkv1240. Epub 2015 Nov 17.

8.

Non-parametric Bayesian approach to post-translational modification refinement of predictions from tandem mass spectrometry.

Chung C, Emili A, Frey BJ.

Bioinformatics. 2013 Apr 1;29(7):821-9. doi: 10.1093/bioinformatics/btt056. Epub 2013 Feb 17.

PMID:
23419374
9.

DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications.

Lu CT, Huang KY, Su MG, Lee TY, Bretaña NA, Chang WC, Chen YJ, Chen YJ, Huang HD.

Nucleic Acids Res. 2013 Jan;41(Database issue):D295-305. doi: 10.1093/nar/gks1229. Epub 2012 Nov 27.

10.

Computational refinement of post-translational modifications predicted from tandem mass spectrometry.

Chung C, Liu J, Emili A, Frey BJ.

Bioinformatics. 2011 Mar 15;27(6):797-806. doi: 10.1093/bioinformatics/btr017. Epub 2011 Jan 22.

11.

Software eyes for protein post-translational modifications.

Na S, Paek E.

Mass Spectrom Rev. 2015 Mar-Apr;34(2):133-47. doi: 10.1002/mas.21425. Epub 2014 Jun 2. Review.

PMID:
24889695
12.

BioAfrica's HIV-1 proteomics resource: combining protein data with bioinformatics tools.

Doherty RS, De Oliveira T, Seebregts C, Danaviah S, Gordon M, Cassol S.

Retrovirology. 2005 Mar 9;2:18.

13.

PTM MarkerFinder, a software tool to detect and validate spectra from peptides carrying post-translational modifications.

Nanni P, Panse C, Gehrig P, Mueller S, Grossmann J, Schlapbach R.

Proteomics. 2013 Aug;13(15):2251-5. doi: 10.1002/pmic.201300036. Epub 2013 Jul 1.

PMID:
23713006
14.

Quantitation of protein post-translational modifications using isobaric tandem mass tags.

Liang HC, Lahert E, Pike I, Ward M.

Bioanalysis. 2015;7(3):383-400. doi: 10.4155/bio.14.296. Review.

PMID:
25697195
15.

SysPTM 2.0: an updated systematic resource for post-translational modification.

Li J, Jia J, Li H, Yu J, Sun H, He Y, Lv D, Yang X, Glocker MO, Ma L, Yang J, Li L, Li W, Zhang G, Liu Q, Li Y, Xie L.

Database (Oxford). 2014 Apr 3;2014:bau025. doi: 10.1093/database/bau025. Print 2014.

16.

Web and database software for identification of intact proteins using "top down" mass spectrometry.

Taylor GK, Kim YB, Forbes AJ, Meng F, McCarthy R, Kelleher NL.

Anal Chem. 2003 Aug 15;75(16):4081-6.

PMID:
14632120
17.
18.

Proteomic databases and tools to decipher post-translational modifications.

Kamath KS, Vasavada MS, Srivastava S.

J Proteomics. 2011 Dec 10;75(1):127-44. doi: 10.1016/j.jprot.2011.09.014. Epub 2011 Sep 29. Review.

PMID:
21983556
19.

POTAMOS mass spectrometry calculator: computer aided mass spectrometry to the post-translational modifications of proteins. A focus on histones.

Vlachopanos A, Soupsana E, Politou AS, Papamokos GV.

Comput Biol Med. 2014 Dec;55:36-41. doi: 10.1016/j.compbiomed.2014.10.002. Epub 2014 Oct 16.

PMID:
25450216
20.

PEIMAN 1.0: Post-translational modification Enrichment, Integration and Matching ANalysis.

Nickchi P, Jafari M, Kalantari S.

Database (Oxford). 2015 Apr 23;2015:bav037. doi: 10.1093/database/bav037. Print 2015.

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