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Items: 1 to 20 of 94

1.

Detecting microRNA activity from gene expression data.

Madden SF, Carpenter SB, Jeffery IB, Björkbacka H, Fitzgerald KA, O'Neill LA, Higgins DG.

BMC Bioinformatics. 2010 May 18;11:257. doi: 10.1186/1471-2105-11-257.

2.

Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data.

Wang YP, Li KB.

BMC Genomics. 2009 May 12;10:218. doi: 10.1186/1471-2164-10-218.

3.

Bioinformatics Resource Manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools.

Tilton SC, Tal TL, Scroggins SM, Franzosa JA, Peterson ES, Tanguay RL, Waters KM.

BMC Bioinformatics. 2012 Nov 23;13:311. doi: 10.1186/1471-2105-13-311.

4.

Modeling microRNA-mRNA interactions using PLS regression in human colon cancer.

Li X, Gill R, Cooper NG, Yoo JK, Datta S.

BMC Med Genomics. 2011 May 19;4:44. doi: 10.1186/1755-8794-4-44.

5.

Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers.

Peng X, Li Y, Walters KA, Rosenzweig ER, Lederer SL, Aicher LD, Proll S, Katze MG.

BMC Genomics. 2009 Aug 11;10:373. doi: 10.1186/1471-2164-10-373.

6.

Increasing MicroRNA target prediction confidence by the relative R(2) method.

Wang H, Li WH.

J Theor Biol. 2009 Aug 21;259(4):793-8. doi: 10.1016/j.jtbi.2009.05.007. Epub 2009 May 20.

7.

Identifying microRNA-mRNA regulatory network in colorectal cancer by a combination of expression profile and bioinformatics analysis.

Fu J, Tang W, Du P, Wang G, Chen W, Li J, Zhu Y, Gao J, Cui L.

BMC Syst Biol. 2012 Jun 15;6:68. doi: 10.1186/1752-0509-6-68.

8.

An in silico analysis of dynamic changes in microRNA expression profiles in stepwise development of nasopharyngeal carcinoma.

Luo Z, Zhang L, Li Z, Li X, Li G, Yu H, Jiang C, Dai Y, Guo X, Xiang J, Li G.

BMC Med Genomics. 2012 Jan 19;5:3. doi: 10.1186/1755-8794-5-3.

9.

miRGator: an integrated system for functional annotation of microRNAs.

Nam S, Kim B, Shin S, Lee S.

Nucleic Acids Res. 2008 Jan;36(Database issue):D159-64. Epub 2007 Oct 16.

10.

Identification and characteristics of microRNAs from Bombyx mori.

He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y.

BMC Genomics. 2008 May 28;9:248. doi: 10.1186/1471-2164-9-248.

11.

Individual mRNA expression profiles reveal the effects of specific microRNAs.

Arora A, Simpson DA.

Genome Biol. 2008;9(5):R82. doi: 10.1186/gb-2008-9-5-r82. Epub 2008 May 16.

12.

MicroRNA expression signature in human abdominal aortic aneurysms.

Pahl MC, Derr K, Gäbel G, Hinterseher I, Elmore JR, Schworer CM, Peeler TC, Franklin DP, Gray JL, Carey DJ, Tromp G, Kuivaniemi H.

BMC Med Genomics. 2012 Jun 15;5:25. doi: 10.1186/1755-8794-5-25.

13.

Expression profiling of differentiating eosinophils in bone marrow cultures predicts functional links between microRNAs and their target mRNAs.

Yang M, Eyers F, Xiang Y, Guo M, Young IG, Rosenberg HF, Foster PS.

PLoS One. 2014 May 13;9(5):e97537. doi: 10.1371/journal.pone.0097537. eCollection 2014.

14.

A least angle regression model for the prediction of canonical and non-canonical miRNA-mRNA interactions.

Engelmann JC, Spang R.

PLoS One. 2012;7(7):e40634. doi: 10.1371/journal.pone.0040634. Epub 2012 Jul 17.

15.

Prediction of miRNA-mRNA associations in Alzheimer's disease mice using network topology.

Noh H, Park C, Park S, Lee YS, Cho SY, Seo H.

BMC Genomics. 2014 Aug 3;15:644. doi: 10.1186/1471-2164-15-644.

16.

mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets.

Ritchie W, Flamant S, Rasko JE.

Bioinformatics. 2010 Jan 15;26(2):223-7. doi: 10.1093/bioinformatics/btp649. Epub 2009 Nov 17.

PMID:
19933167
17.

Anti-Argonaute RIP-Chip shows that miRNA transfections alter global patterns of mRNA recruitment to microribonucleoprotein complexes.

Wang WX, Wilfred BR, Hu Y, Stromberg AJ, Nelson PT.

RNA. 2010 Feb;16(2):394-404. doi: 10.1261/rna.1905910. Epub 2009 Dec 30.

18.

MicroRNAs and cardiac sarcoplasmic reticulum calcium ATPase-2 in human myocardial infarction: expression and bioinformatic analysis.

Boštjančič E, Zidar N, Glavač D.

BMC Genomics. 2012 Oct 15;13:552. doi: 10.1186/1471-2164-13-552.

19.

Identification of microRNA-mRNA modules using microarray data.

Jayaswal V, Lutherborrow M, Ma DD, Yang YH.

BMC Genomics. 2011 Mar 6;12:138. doi: 10.1186/1471-2164-12-138.

20.

Prediction of human microRNA targets.

John B, Sander C, Marks DS.

Methods Mol Biol. 2006;342:101-13. Review.

PMID:
16957370

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