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Items: 1 to 20 of 115

1.

Visual integration of quantitative proteomic data, pathways, and protein interactions.

Jianu R, Yu K, Cao L, Nguyen V, Salomon AR, Laidlaw DH.

IEEE Trans Vis Comput Graph. 2010 Jul-Aug;16(4):609-20. doi: 10.1109/TVCG.2009.106.

2.

A query language for biological networks.

Leser U.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii33-9.

3.

PATIKAweb: a Web interface for analyzing biological pathways through advanced querying and visualization.

Dogrusoz U, Erson EZ, Giral E, Demir E, Babur O, Cetintas A, Colak R.

Bioinformatics. 2006 Feb 1;22(3):374-5.

4.

Searching, viewing, and visualizing data in the Biomolecular Interaction Network Database (BIND).

Willis RC, Hogue CW.

Curr Protoc Bioinformatics. 2006 Jan;Chapter 8:Unit 8.9. doi: 10.1002/0471250953.bi0809s12.

PMID:
18428770
5.

Visualisation and navigation methods for typed protein-protein interaction networks.

Friedrich C, Schreiber F.

Appl Bioinformatics. 2003;2(3 Suppl):S19-24.

PMID:
15130812
6.

PIMWalker: visualising protein interaction networks using the HUPO PSI molecular interaction format.

Meil A, Durand P, Wojcik J.

Appl Bioinformatics. 2005;4(2):137-9.

PMID:
16128615
7.

ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining.

Huan T, Sivachenko AY, Harrison SH, Chen JY.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S5. doi: 10.1186/1471-2105-9-S9-S5.

8.

BioNetBuilder: automatic integration of biological networks.

Avila-Campillo I, Drew K, Lin J, Reiss DJ, Bonneau R.

Bioinformatics. 2007 Feb 1;23(3):392-3.

9.

Towards zoomable multidimensional maps of the cell.

Hu Z, Mellor J, Wu J, Kanehisa M, Stuart JM, DeLisi C.

Nat Biotechnol. 2007 May;25(5):547-54. Review.

PMID:
17483841
10.

Browsing multidimensional molecular networks with the generic network browser (N-Browse).

Kao HL, Gunsalus KC.

Curr Protoc Bioinformatics. 2008 Sep;Chapter 9:Unit 9.11. doi: 10.1002/0471250953.bi0911s23.

11.

Using the MetaCyc pathway database and the BioCyc database collection.

Caspi R, Karp PD.

Curr Protoc Bioinformatics. 2007 Dec;Chapter 1:Unit1.17. doi: 10.1002/0471250953.bi0117s20.

PMID:
18428679
12.

2.5D visualisation of overlapping biological networks.

Fung DC, Hong SH, Kosch├╝tzki D, Schreiber F, Xu K.

J Integr Bioinform. 2008 Nov 10;5(1). doi: 10.2390/biecoll-jib-2008-90.

PMID:
20134057
13.

WebCell: a web-based environment for kinetic modeling and dynamic simulation of cellular networks.

Lee DY, Yun C, Cho A, Hou BK, Park S, Lee SY.

Bioinformatics. 2006 May 1;22(9):1150-1.

14.

Data mining in protein interactomics. Six computational research challenges and opportunities.

Chen JY, Sivachenko AY.

IEEE Eng Med Biol Mag. 2005 May-Jun;24(3):95-102. No abstract available.

PMID:
15971847
15.

BisoGenet: a new tool for gene network building, visualization and analysis.

Martin A, Ochagavia ME, Rabasa LC, Miranda J, Fernandez-de-Cossio J, Bringas R.

BMC Bioinformatics. 2010 Feb 17;11:91. doi: 10.1186/1471-2105-11-91.

16.

Semantic integration to identify overlapping functional modules in protein interaction networks.

Cho YR, Hwang W, Ramanathan M, Zhang A.

BMC Bioinformatics. 2007 Jul 24;8:265.

17.

INTEGRATOR: interactive graphical search of large protein interactomes over the Web.

Chang AN, McDermott J, Frazier Z, Guerquin M, Samudrala R.

BMC Bioinformatics. 2006 Mar 16;7:146.

18.

PathSys: integrating molecular interaction graphs for systems biology.

Baitaluk M, Qian X, Godbole S, Raval A, Ray A, Gupta A.

BMC Bioinformatics. 2006 Feb 7;7:55.

19.

Analyzing networks with VisANT.

Hu Z, Mellor J, DeLisi C.

Curr Protoc Bioinformatics. 2004 Dec;Chapter 8:Unit 8.8. doi: 10.1002/0471250953.bi0808s08.

PMID:
18428738
20.

The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.

Salwinski L, Eisenberg D.

Bioinformatics. 2007 Aug 15;23(16):2193-5.

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