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Items: 1 to 20 of 779

1.

GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.

Risueño A, Fontanillo C, Dinger ME, De Las Rivas J.

BMC Bioinformatics. 2010 Apr 29;11:221. doi: 10.1186/1471-2105-11-221.

2.

Gene expression and isoform variation analysis using Affymetrix Exon Arrays.

Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.

BMC Genomics. 2008 Nov 7;9:529. doi: 10.1186/1471-2164-9-529. Erratum in: BMC Genomics. 2009 Mar 23;10. doi: 10.1186/1471-2164-10-121.

3.

X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis.

Yates T, Okoniewski MJ, Miller CJ.

Nucleic Acids Res. 2008 Jan;36(Database issue):D780-6. Epub 2007 Oct 11.

4.

Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.

Rambaldi D, Felice B, Praz V, Bucher P, Cittaro D, Guffanti A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S17.

5.

[Transcriptomes for serial analysis of gene expression].

Marti J, Piquemal D, Manchon L, Commes T.

J Soc Biol. 2002;196(4):303-7. Review. French.

PMID:
12645300
6.

A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.

Alberts R, Terpstra P, Hardonk M, Bystrykh LV, de Haan G, Breitling R, Nap JP, Jansen RC.

BMC Bioinformatics. 2007 Apr 20;8:132.

7.

Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation.

Ha KCh, Coulombe-Huntington J, Majewski J.

BMC Genomics. 2009 Nov 12;10:519. doi: 10.1186/1471-2164-10-519.

8.

Analysis of DNA strand-specific differential expression with high density tiling microarrays.

Quintales L, Sánchez M, Antequera F.

BMC Bioinformatics. 2010 Mar 17;11:136. doi: 10.1186/1471-2105-11-136.

9.

Novel definition files for human GeneChips based on GeneAnnot.

Ferrari F, Bortoluzzi S, Coppe A, Sirota A, Safran M, Shmoish M, Ferrari S, Lancet D, Danieli GA, Bicciato S.

BMC Bioinformatics. 2007 Nov 15;8:446.

10.

A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays.

Yoshida R, Numata K, Imoto S, Nagasaki M, Doi A, Ueno K, Miyano S.

Genome Inform. 2006;17(1):88-99.

PMID:
17503359
11.

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26. doi: 10.1186/1471-2105-9-26.

12.

Long versus short oligonucleotide microarrays for the study of gene expression in nonhuman primates.

Walker SJ, Wang Y, Grant KA, Chan F, Hellmann GM.

J Neurosci Methods. 2006 Apr 15;152(1-2):179-89. Epub 2005 Oct 25.

PMID:
16253343
13.

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.

Dai M, Wang P, Boyd AD, Kostov G, Athey B, Jones EG, Bunney WE, Myers RM, Speed TP, Akil H, Watson SJ, Meng F.

Nucleic Acids Res. 2005 Nov 10;33(20):e175.

14.
15.

ProbeLynx: a tool for updating the association of microarray probes to genes.

Roche FM, Hokamp K, Acab M, Babiuk LA, Hancock RE, Brinkman FS.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W471-4.

16.

easyExon--a Java-based GUI tool for processing and visualization of Affymetrix exon array data.

Chang TY, Li YY, Jen CH, Yang TP, Lin CH, Hsu MT, Wang HW.

BMC Bioinformatics. 2008 Oct 14;9:432. doi: 10.1186/1471-2105-9-432.

17.

Genome-wide analysis of antisense transcription with Affymetrix exon array.

Ge X, Rubinstein WS, Jung YC, Wu Q.

BMC Genomics. 2008 Jan 22;9:27. doi: 10.1186/1471-2164-9-27.

18.

GPAT: retrieval of genomic annotation from large genomic position datasets.

Krebs A, Frontini M, Tora L.

BMC Bioinformatics. 2008 Dec 15;9:533. doi: 10.1186/1471-2105-9-533.

19.

Different effects of the probe summarization algorithms PLIER and RMA on high-level analysis of Affymetrix exon arrays.

Qu Y, He F, Chen Y.

BMC Bioinformatics. 2010 Apr 28;11:211. doi: 10.1186/1471-2105-11-211.

20.

ExonMiner: Web service for analysis of GeneChip Exon array data.

Numata K, Yoshida R, Nagasaki M, Saito A, Imoto S, Miyano S.

BMC Bioinformatics. 2008 Nov 26;9:494. doi: 10.1186/1471-2105-9-494.

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