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Items: 1 to 20 of 59

1.

DNA copy number, including telomeres and mitochondria, assayed using next-generation sequencing.

Castle JC, Biery M, Bouzek H, Xie T, Chen R, Misura K, Jackson S, Armour CD, Johnson JM, Rohl CA, Raymond CK.

BMC Genomics. 2010 Apr 16;11:244. doi: 10.1186/1471-2164-11-244.

2.

Genome-wide analysis of DNA copy-number changes using cDNA microarrays.

Pollack JR, Perou CM, Alizadeh AA, Eisen MB, Pergamenschikov A, Williams CF, Jeffrey SS, Botstein D, Brown PO.

Nat Genet. 1999 Sep;23(1):41-6.

PMID:
10471496
3.

High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.

Pinkel D, Segraves R, Sudar D, Clark S, Poole I, Kowbel D, Collins C, Kuo WL, Chen C, Zhai Y, Dairkee SH, Ljung BM, Gray JW, Albertson DG.

Nat Genet. 1998 Oct;20(2):207-11.

PMID:
9771718
5.

Integrated analysis of copy number alteration and RNA expression profiles of cancer using a high-resolution whole-genome oligonucleotide array.

Jung SH, Shin SH, Yim SH, Choi HS, Lee SH, Chung YJ.

Exp Mol Med. 2009 Jul 31;41(7):462-70. doi: 10.3858/emm.2009.41.7.051.

6.

Mouse telomere analysis using an optimized primed in situ (PRINS) labeling technique.

Lavoie J, Bronsard M, Lebel M, Drouin R.

Chromosoma. 2003 Apr;111(7):438-44.

PMID:
12707781
7.

High-resolution genomic copy number profiling of glioblastoma multiforme by single nucleotide polymorphism DNA microarray.

Yin D, Ogawa S, Kawamata N, Tunici P, Finocchiaro G, Eoli M, Ruckert C, Huynh T, Liu G, Kato M, Sanada M, Jauch A, Dugas M, Black KL, Koeffler HP.

Mol Cancer Res. 2009 May;7(5):665-77. doi: 10.1158/1541-7786.MCR-08-0270.

8.

Using expression arrays for copy number detection: an example from E. coli.

Skvortsov D, Abdueva D, Stitzer ME, Finkel SE, Tavaré S.

BMC Bioinformatics. 2007 Jun 14;8:203.

9.

Haplotyping and copy number estimation of the highly polymorphic human beta-defensin locus on 8p23 by 454 amplicon sequencing.

Taudien S, Groth M, Huse K, Petzold A, Szafranski K, Hampe J, Rosenstiel P, Schreiber S, Platzer M.

BMC Genomics. 2010 Apr 19;11:252. doi: 10.1186/1471-2164-11-252.

10.

Chromosomal aberrations and gene expression profiles in non-small cell lung cancer.

Dehan E, Ben-Dor A, Liao W, Lipson D, Frimer H, Rienstein S, Simansky D, Krupsky M, Yaron P, Friedman E, Rechavi G, Perlman M, Aviram-Goldring A, Izraeli S, Bittner M, Yakhini Z, Kaminski N.

Lung Cancer. 2007 May;56(2):175-84.

PMID:
17258348
11.

Genomic microarrays in mental retardation: from copy number variation to gene, from research to diagnosis.

Vissers LE, de Vries BB, Veltman JA.

J Med Genet. 2010 May;47(5):289-97. doi: 10.1136/jmg.2009.072942. Review.

PMID:
19951919
12.

A highly conserved segmental duplication in the subtelomeres of Plasmodium falciparum chromosomes varies in copy number.

Mok BW, Ribacke U, Sherwood E, Wahlgren M.

Malar J. 2008 Mar 7;7:46. doi: 10.1186/1475-2875-7-46.

13.
14.

The complicated copy number alterations in chromosome 7 of a lung cancer cell line is explained by a model based on repeated breakage-fusion-bridge cycles.

Kitada K, Yamasaki T.

Cancer Genet Cytogenet. 2008 Aug;185(1):11-9. doi: 10.1016/j.cancergencyto.2008.04.005.

PMID:
18656688
15.

Telomere length, telomeric proteins and DNA damage repair proteins are differentially expressed between primary lung tumors and their adrenal metastases.

Raynaud CM, Mercier O, Commo F, Dartevelle P, Gomez-Roca C, de Montpreville V, Sabatier L, Soria JC.

Lung Cancer. 2009 Aug;65(2):144-9. doi: 10.1016/j.lungcan.2008.10.030.

PMID:
19091442
16.

A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays.

Nannya Y, Sanada M, Nakazaki K, Hosoya N, Wang L, Hangaishi A, Kurokawa M, Chiba S, Bailey DK, Kennedy GC, Ogawa S.

Cancer Res. 2005 Jul 15;65(14):6071-9.

17.

Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next-generation sequence data.

Gusnanto A, Wood HM, Pawitan Y, Rabbitts P, Berri S.

Bioinformatics. 2012 Jan 1;28(1):40-7. doi: 10.1093/bioinformatics/btr593.

PMID:
22039209
19.
20.

Identification of DNA copy number changes in microdissected serous ovarian cancer tissue using a cDNA microarray platform.

Tsuda H, Birrer MJ, Ito YM, Ohashi Y, Lin M, Lee C, Wong WH, Rao PH, Lau CC, Berkowitz RS, Wong KK, Mok SC.

Cancer Genet Cytogenet. 2004 Dec;155(2):97-107.

PMID:
15571795

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