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Neuroimaging workflow design and data-mining: a frontiers in neuroinformatics special issue.

Van Horn JD, Toga AW.

Front Neuroinform. 2009 Sep 8;3:31. doi: 10.3389/neuro.11.031.2009. eCollection 2009. No abstract available.


Workflow-based approaches to neuroimaging analysis.

Fissell K.

Methods Mol Biol. 2007;401:235-66. doi: 10.1007/978-1-59745-520-6_14.


Visual systems for interactive exploration and mining of large-scale neuroimaging data archives.

Bowman I, Joshi SH, Van Horn JD.

Front Neuroinform. 2012 Apr 23;6:11. doi: 10.3389/fninf.2012.00011. eCollection 2012.


Visualizing data mining results with the brede tools.

Nielsen FA.

Front Neuroinform. 2009 Jul 28;3:26. doi: 10.3389/neuro.11.026.2009. eCollection 2009.


CamBAfx: Workflow Design, Implementation and Application for Neuroimaging.

Ooi C, Bullmore ET, Wink AM, Sendur L, Barnes A, Achard S, Aspden J, Abbott S, Yue S, Kitzbichler M, Meunier D, Maxim V, Salvador R, Henty J, Tait R, Subramaniam N, Suckling J.

Front Neuroinform. 2009 Aug 28;3:27. doi: 10.3389/neuro.11.027.2009. eCollection 2009.


Bio-swarm-pipeline: a light-weight, extensible batch processing system for efficient biomedical data processing.

Cheng X, Pizarro R, Tong Y, Zoltick B, Luo Q, Weinberger DR, Mattay VS.

Front Neuroinform. 2009 Oct 9;3:35. doi: 10.3389/neuro.11.035.2009. eCollection 2009.


Increasing quality and managing complexity in neuroinformatics software development with continuous integration.

Zaytsev YV, Morrison A.

Front Neuroinform. 2013 Jan 3;6:31. doi: 10.3389/fninf.2012.00031. eCollection 2012.


Text mining meets workflow: linking U-Compare with Taverna.

Kano Y, Dobson P, Nakanishi M, Tsujii J, Ananiadou S.

Bioinformatics. 2010 Oct 1;26(19):2486-7. doi: 10.1093/bioinformatics/btq464. Epub 2010 Aug 12.


Text mining for the biocuration workflow.

Hirschman L, Burns GA, Krallinger M, Arighi C, Cohen KB, Valencia A, Wu CH, Chatr-Aryamontri A, Dowell KG, Huala E, Lourenço A, Nash R, Veuthey AL, Wiegers T, Winter AG.

Database (Oxford). 2012 Apr 18;2012:bas020. doi: 10.1093/database/bas020. Print 2012.


Neuroinformatics challenges to the structural, connectomic, functional and electrophysiological multimodal imaging of human traumatic brain injury.

Goh SY, Irimia A, Torgerson CM, Horn JD.

Front Neuroinform. 2014 Feb 26;8:19. doi: 10.3389/fninf.2014.00019. eCollection 2014. Review.


Neuroimaging data sharing on the neuroinformatics database platform.

Book GA, Stevens MC, Assaf M, Glahn DC, Pearlson GD.

Neuroimage. 2016 Jan 1;124(Pt B):1089-92. doi: 10.1016/j.neuroimage.2015.04.022. Epub 2015 Apr 16.


Interacting with the National Database for Autism Research (NDAR) via the LONI Pipeline workflow environment.

Torgerson CM, Quinn C, Dinov I, Liu Z, Petrosyan P, Pelphrey K, Haselgrove C, Kennedy DN, Toga AW, Van Horn JD.

Brain Imaging Behav. 2015 Mar;9(1):89-103. doi: 10.1007/s11682-015-9354-z.


Neuroinformatics Database (NiDB)--a modular, portable database for the storage, analysis, and sharing of neuroimaging data.

Book GA, Anderson BM, Stevens MC, Glahn DC, Assaf M, Pearlson GD.

Neuroinformatics. 2013 Oct;11(4):495-505. doi: 10.1007/s12021-013-9194-1.


Finding biomarkers in non-model species: literature mining of transcription factors involved in bovine embryo development.

Turenne N, Tiys E, Ivanisenko V, Yudin N, Ignatieva E, Valour D, Degrelle SA, Hue I.

BioData Min. 2012 Aug 29;5(1):12. doi: 10.1186/1756-0381-5-12.


Opportunities for text mining in the FlyBase genetic literature curation workflow.

McQuilton P; FlyBase Consortium.

Database (Oxford). 2012 Nov 17;2012:bas039. doi: 10.1093/database/bas039. Print 2012.


The Three NITRCs: A Guide to Neuroimaging Neuroinformatics Resources.

Kennedy DN, Haselgrove C, Riehl J, Preuss N, Buccigrossi R.

Neuroinformatics. 2015 Jul;13(3):383-6. doi: 10.1007/s12021-015-9263-8. No abstract available.


Web-video-mining-supported workflow modeling for laparoscopic surgeries.

Liu R, Zhang X, Zhang H.

Artif Intell Med. 2016 Nov;74:9-20. doi: 10.1016/j.artmed.2016.11.002. Epub 2016 Nov 18.


Informatics united: exemplary studies combining medical informatics, neuroinformatics and bioinformatics.

Wiemer J, Schubert F, Granzow M, Ragg T, Fieres J, Mattes J, Eils R.

Methods Inf Med. 2003;42(2):126-33.


Results from data mining in a radiology department: the relevance of data quality.

Lang M, Kirpekar N, Bürkle T, Laumann S, Prokosch HU.

Stud Health Technol Inform. 2007;129(Pt 1):576-80.


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