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Items: 1 to 20 of 109

1.

A primer on metagenomics.

Wooley JC, Godzik A, Friedberg I.

PLoS Comput Biol. 2010 Feb 26;6(2):e1000667. doi: 10.1371/journal.pcbi.1000667. Review.

2.

Connecting genotype to phenotype in the era of high-throughput sequencing.

Henry CS, Overbeek R, Xia F, Best AA, Glass E, Gilbert J, Larsen P, Edwards R, Disz T, Meyer F, Vonstein V, Dejongh M, Bartels D, Desai N, D'Souza M, Devoid S, Keegan KP, Olson R, Wilke A, Wilkening J, Stevens RL.

Biochim Biophys Acta. 2011 Oct;1810(10):967-77. doi: 10.1016/j.bbagen.2011.03.010. Epub 2011 Mar 21. Review.

PMID:
21421023
3.

An ORFome assembly approach to metagenomics sequences analysis.

Ye Y, Tang H.

Comput Syst Bioinformatics Conf. 2008;7:3-13.

4.

[A review on the bioinformatics pipelines for metagenomic research].

Ye DD, Fan MM, Guan Q, Chen HJ, Ma ZS.

Dongwuxue Yanjiu. 2012 Dec;33(6):574-85. doi: 10.3724/SP.J.1141.2012.06574. Review. Chinese.

5.

Metagenomics: microbial diversity through a scratched lens.

Temperton B, Giovannoni SJ.

Curr Opin Microbiol. 2012 Oct;15(5):605-12. doi: 10.1016/j.mib.2012.07.001. Epub 2012 Jul 23. Review.

PMID:
22831844
6.

Metagenomics using next-generation sequencing.

Bragg L, Tyson GW.

Methods Mol Biol. 2014;1096:183-201. doi: 10.1007/978-1-62703-712-9_15.

PMID:
24515370
7.

Targeted metagenomics: a high-resolution metagenomics approach for specific gene clusters in complex microbial communities.

Suenaga H.

Environ Microbiol. 2012 Jan;14(1):13-22. doi: 10.1111/j.1462-2920.2011.02438.x. Epub 2011 Mar 1. Review.

PMID:
21366818
8.

Resources and costs for microbial sequence analysis evaluated using virtual machines and cloud computing.

Angiuoli SV, White JR, Matalka M, White O, Fricke WF.

PLoS One. 2011;6(10):e26624. doi: 10.1371/journal.pone.0026624. Epub 2011 Oct 19.

9.

From bacterial to microbial ecosystems (metagenomics).

Williamson SJ, Yooseph S.

Methods Mol Biol. 2012;804:35-55. doi: 10.1007/978-1-61779-361-5_3. Review.

PMID:
22144147
10.

An ORFome assembly approach to metagenomics sequences analysis.

Ye Y, Tang H.

J Bioinform Comput Biol. 2009 Jun;7(3):455-71.

11.

Genomic sequencing of uncultured microorganisms from single cells.

Lasken RS.

Nat Rev Microbiol. 2012 Sep;10(9):631-40. doi: 10.1038/nrmicro2857. Review.

PMID:
22890147
12.

Metagenomics - a guide from sampling to data analysis.

Thomas T, Gilbert J, Meyer F.

Microb Inform Exp. 2012 Feb 9;2(1):3. doi: 10.1186/2042-5783-2-3.

13.

Parallel-META 2.0: enhanced metagenomic data analysis with functional annotation, high performance computing and advanced visualization.

Su X, Pan W, Song B, Xu J, Ning K.

PLoS One. 2014 Mar 3;9(3):e89323. doi: 10.1371/journal.pone.0089323. eCollection 2014.

14.

Signal processing for metagenomics: extracting information from the soup.

Rosen GL, Sokhansanj BA, Polikar R, Bruns MA, Russell J, Garbarine E, Essinger S, Yok N.

Curr Genomics. 2009 Nov;10(7):493-510. doi: 10.2174/138920209789208255.

15.

Functional metagenomics: recent advances and future challenges.

Chistoserdovai L.

Biotechnol Genet Eng Rev. 2010;26:335-52. Review.

PMID:
21415887
16.

Taxonomic binning of metagenome samples generated by next-generation sequencing technologies.

Dröge J, McHardy AC.

Brief Bioinform. 2012 Nov;13(6):646-55. doi: 10.1093/bib/bbs031. Epub 2012 Jul 31.

17.

Analytical tools and databases for metagenomics in the next-generation sequencing era.

Kim M, Lee KH, Yoon SW, Kim BS, Chun J, Yi H.

Genomics Inform. 2013 Sep;11(3):102-13. doi: 10.5808/GI.2013.11.3.102. Epub 2013 Sep 30. Review.

18.

Sequence assembly demystified.

Nagarajan N, Pop M.

Nat Rev Genet. 2013 Mar;14(3):157-67. doi: 10.1038/nrg3367. Epub 2013 Jan 29. Review.

PMID:
23358380
19.

Identifying biologically relevant differences between metagenomic communities.

Parks DH, Beiko RG.

Bioinformatics. 2010 Mar 15;26(6):715-21. doi: 10.1093/bioinformatics/btq041. Epub 2010 Feb 3.

20.

From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems.

Garza DR, Dutilh BE.

Cell Mol Life Sci. 2015 Nov;72(22):4287-308. doi: 10.1007/s00018-015-2004-1. Epub 2015 Aug 9. Review.

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