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Items: 1 to 20 of 86

1.

Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis.

Salonen A, Nikkilä J, Jalanka-Tuovinen J, Immonen O, Rajilić-Stojanović M, Kekkonen RA, Palva A, de Vos WM.

J Microbiol Methods. 2010 May;81(2):127-34. doi: 10.1016/j.mimet.2010.02.007. Epub 2010 Feb 19.

PMID:
20171997
2.

Semi-automated extraction of microbial DNA from feces for qPCR and phylogenetic microarray analysis.

Nylund L, Heilig HG, Salminen S, de Vos WM, Satokari R.

J Microbiol Methods. 2010 Nov;83(2):231-5. doi: 10.1016/j.mimet.2010.09.003. Epub 2010 Sep 16.

PMID:
20849891
3.

DNA extractions from deep subseafloor sediments: novel cryogenic-mill-based procedure and comparison to existing protocols.

Alain K, Callac N, Ciobanu MC, Reynaud Y, Duthoit F, Jebbar M.

J Microbiol Methods. 2011 Dec;87(3):355-62. doi: 10.1016/j.mimet.2011.09.015. Epub 2011 Oct 7.

PMID:
22005039
4.

Influence of DNA isolation on Q-PCR-based quantification of methanogenic Archaea in biogas fermenters.

Bergmann I, Mundt K, Sontag M, Baumstark I, Nettmann E, Klocke M.

Syst Appl Microbiol. 2010 Mar;33(2):78-84. doi: 10.1016/j.syapm.2009.11.004. Epub 2010 Jan 22.

PMID:
20097028
5.

Evaluation of QIAamp DNA Stool Mini Kit for ecological studies of gut microbiota.

Li M, Gong J, Cottrill M, Yu H, de Lange C, Burton J, Topp E.

J Microbiol Methods. 2003 Jul;54(1):13-20.

PMID:
12732417
6.

Field preservation and DNA extraction methods for intestinal microbial diversity analysis in earthworms.

Thakuria D, Schmidt O, Liliensiek AK, Egan D, Doohan FM.

J Microbiol Methods. 2009 Mar;76(3):226-33. doi: 10.1016/j.mimet.2008.10.015. Epub 2008 Nov 11.

PMID:
19038293
8.

Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing.

Roh SW, Kim KH, Nam YD, Chang HW, Park EJ, Bae JW.

ISME J. 2010 Jan;4(1):1-16. doi: 10.1038/ismej.2009.83. Epub 2009 Jul 9.

PMID:
19587773
9.

Are Archaea inherently less diverse than Bacteria in the same environments?

Aller JY, Kemp PF.

FEMS Microbiol Ecol. 2008 Jul;65(1):74-87. doi: 10.1111/j.1574-6941.2008.00498.x. Epub 2008 May 8.

10.

DNA extraction procedure: a critical issue for bacterial diversity assessment in marine sediments.

Luna GM, Dell'Anno A, Danovaro R.

Environ Microbiol. 2006 Feb;8(2):308-20.

PMID:
16423017
11.

Community structure of Archaea and Bacteria in a profundal lake sediment Lake Kinneret (Israel).

Schwarz JI, Eckert W, Conrad R.

Syst Appl Microbiol. 2007 Apr;30(3):239-54. Epub 2006 Jul 18.

PMID:
16857336
12.

Life without light: microbial diversity and evidence of sulfur- and ammonium-based chemolithotrophy in Movile Cave.

Chen Y, Wu L, Boden R, Hillebrand A, Kumaresan D, Moussard H, Baciu M, Lu Y, Colin Murrell J.

ISME J. 2009 Sep;3(9):1093-104. doi: 10.1038/ismej.2009.57. Epub 2009 May 28.

PMID:
19474813
13.

Phylogenetic analysis of Methanobrevibacter isolated from feces of humans and other animals.

Lin C, Miller TL.

Arch Microbiol. 1998 May;169(5):397-403.

PMID:
9560420
14.

The vertical distribution of bacterial and archaeal communities in the water and sediment of Lake Taihu.

Ye W, Liu X, Lin S, Tan J, Pan J, Li D, Yang H.

FEMS Microbiol Ecol. 2009 Nov;70(2):107-20. doi: 10.1111/j.1574-6941.2009.00761.x. Epub 2009 Aug 7.

15.

Exploring microbial diversity in volcanic environments: a review of methods in DNA extraction.

Herrera A, Cockell CS.

J Microbiol Methods. 2007 Jul;70(1):1-12. Epub 2007 Apr 21. Review.

PMID:
17540467
16.

PCR DGGE and RT-PCR DGGE show diversity and short-term temporal stability in the Clostridium coccoides-Eubacterium rectale group in the human intestinal microbiota.

Maukonen J, Mättö J, Satokari R, Söderlund H, Mattila-Sandholm T, Saarela M.

FEMS Microbiol Ecol. 2006 Dec;58(3):517-28.

17.

Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions.

Martin-Cuadrado AB, Rodriguez-Valera F, Moreira D, Alba JC, Ivars-Martínez E, Henn MR, Talla E, López-García P.

ISME J. 2008 Aug;2(8):865-86. doi: 10.1038/ismej.2008.40. Epub 2008 May 8.

PMID:
18463691
18.

Linking phylogenetic and functional diversity to nutrient spiraling in microbial mats from Lower Kane Cave (USA).

Engel AS, Meisinger DB, Porter ML, Payn RA, Schmid M, Stern LA, Schleifer KH, Lee NM.

ISME J. 2010 Jan;4(1):98-110. doi: 10.1038/ismej.2009.91. Epub 2009 Aug 13.

PMID:
19675595
19.

Diverse microbial communities inhabit Antarctic sponges.

Webster NS, Negri AP, Munro MM, Battershill CN.

Environ Microbiol. 2004 Mar;6(3):288-300.

PMID:
14871212
20.

Meta-analyses of studies of the human microbiota.

Lozupone CA, Stombaugh J, Gonzalez A, Ackermann G, Wendel D, Vázquez-Baeza Y, Jansson JK, Gordon JI, Knight R.

Genome Res. 2013 Oct;23(10):1704-14. doi: 10.1101/gr.151803.112. Epub 2013 Jul 16.

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