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Items: 1 to 20 of 114

1.

Allelic skewing of DNA methylation is widespread across the genome.

Schalkwyk LC, Meaburn EL, Smith R, Dempster EL, Jeffries AR, Davies MN, Plomin R, Mill J.

Am J Hum Genet. 2010 Feb 12;86(2):196-212. doi: 10.1016/j.ajhg.2010.01.014.

2.

Tissue-specific patterns of allelically-skewed DNA methylation.

Marzi SJ, Meaburn EL, Dempster EL, Lunnon K, Paya-Cano JL, Smith RG, Volta M, Troakes C, Schalkwyk LC, Mill J.

Epigenetics. 2016;11(1):24-35. doi: 10.1080/15592294.2015.1127479. Epub 2016 Jan 19.

3.

Comparative anatomy of chromosomal domains with imprinted and non-imprinted allele-specific DNA methylation.

Paliwal A, Temkin AM, Kerkel K, Yale A, Yotova I, Drost N, Lax S, Nhan-Chang CL, Powell C, Borczuk A, Aviv A, Wapner R, Chen X, Nagy PL, Schork N, Do C, Torkamani A, Tycko B.

PLoS Genet. 2013 Aug;9(8):e1003622. doi: 10.1371/journal.pgen.1003622. Epub 2013 Aug 29.

4.

Genome-wide DNA methylation analysis of patients with imprinting disorders identifies differentially methylated regions associated with novel candidate imprinted genes.

Docherty LE, Rezwan FI, Poole RL, Jagoe H, Lake H, Lockett GA, Arshad H, Wilson DI, Holloway JW, Temple IK, Mackay DJ.

J Med Genet. 2014 Apr;51(4):229-38. doi: 10.1136/jmedgenet-2013-102116. Epub 2014 Feb 5. Erratum in: J Med Genet. 2014 Jul;51(7):478.

5.

Allele-specific methylation in the human genome: implications for genetic studies of complex disease.

Meaburn EL, Schalkwyk LC, Mill J.

Epigenetics. 2010 Oct 1;5(7):578-82. doi: 10.4161/epi.5.7.12960. Epub 2010 Oct 1. Review.

6.

DNA Methylation Profiling of Uniparental Disomy Subjects Provides a Map of Parental Epigenetic Bias in the Human Genome.

Joshi RS, Garg P, Zaitlen N, Lappalainen T, Watson CT, Azam N, Ho D, Li X, Antonarakis SE, Brunner HG, Buiting K, Cheung SW, Coffee B, Eggermann T, Francis D, Geraedts JP, Gimelli G, Jacobson SG, Le Caignec C, de Leeuw N, Liehr T, Mackay DJ, Montgomery SB, Pagnamenta AT, Papenhausen P, Robinson DO, Ruivenkamp C, Schwartz C, Steiner B, Stevenson DA, Surti U, Wassink T, Sharp AJ.

Am J Hum Genet. 2016 Sep 1;99(3):555-566. doi: 10.1016/j.ajhg.2016.06.032. Epub 2016 Aug 25.

7.

Impact of the genome on the epigenome is manifested in DNA methylation patterns of imprinted regions in monozygotic and dizygotic twins.

Coolen MW, Statham AL, Qu W, Campbell MJ, Henders AK, Montgomery GW, Martin NG, Clark SJ.

PLoS One. 2011;6(10):e25590. doi: 10.1371/journal.pone.0025590. Epub 2011 Oct 3.

8.

Mechanisms and Disease Associations of Haplotype-Dependent Allele-Specific DNA Methylation.

Do C, Lang CF, Lin J, Darbary H, Krupska I, Gaba A, Petukhova L, Vonsattel JP, Gallagher MP, Goland RS, Clynes RA, Dwork A, Kral JG, Monk C, Christiano AM, Tycko B.

Am J Hum Genet. 2016 May 5;98(5):934-955. doi: 10.1016/j.ajhg.2016.03.027.

9.

Methylation screening of reciprocal genome-wide UPDs identifies novel human-specific imprinted genes.

Nakabayashi K, Trujillo AM, Tayama C, Camprubi C, Yoshida W, Lapunzina P, Sanchez A, Soejima H, Aburatani H, Nagae G, Ogata T, Hata K, Monk D.

Hum Mol Genet. 2011 Aug 15;20(16):3188-97. doi: 10.1093/hmg/ddr224. Epub 2011 May 18.

PMID:
21593219
10.

Genome-wide parent-of-origin DNA methylation analysis reveals the intricacies of human imprinting and suggests a germline methylation-independent mechanism of establishment.

Court F, Tayama C, Romanelli V, Martin-Trujillo A, Iglesias-Platas I, Okamura K, Sugahara N, Simón C, Moore H, Harness JV, Keirstead H, Sanchez-Mut JV, Kaneki E, Lapunzina P, Soejima H, Wake N, Esteller M, Ogata T, Hata K, Nakabayashi K, Monk D.

Genome Res. 2014 Apr;24(4):554-69. doi: 10.1101/gr.164913.113. Epub 2014 Jan 8.

11.

Differentially methylated regions of imprinted genes in prenatal, perinatal and postnatal human tissues.

Murphy SK, Huang Z, Hoyo C.

PLoS One. 2012;7(7):e40924. doi: 10.1371/journal.pone.0040924. Epub 2012 Jul 13.

12.

Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome.

Cheung WA, Shao X, Morin A, Siroux V, Kwan T, Ge B, Aïssi D, Chen L, Vasquez L, Allum F, Guénard F, Bouzigon E, Simon MM, Boulier E, Redensek A, Watt S, Datta A, Clarke L, Flicek P, Mead D, Paul DS, Beck S, Bourque G, Lathrop M, Tchernof A, Vohl MC, Demenais F, Pin I, Downes K, Stunnenberg HG, Soranzo N, Pastinen T, Grundberg E.

Genome Biol. 2017 Mar 10;18(1):50. doi: 10.1186/s13059-017-1173-7.

13.

Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome.

Shoemaker R, Deng J, Wang W, Zhang K.

Genome Res. 2010 Jul;20(7):883-9. doi: 10.1101/gr.104695.109. Epub 2010 Apr 23.

14.

GWAS of DNA methylation variation within imprinting control regions suggests parent-of-origin association.

Rentería ME, Coolen MW, Statham AL, Choi RS, Qu W, Campbell MJ, Smith S, Henders AK, Montgomery GW, Clark SJ, Martin NG, Medland SE.

Twin Res Hum Genet. 2013 Aug;16(4):767-81. doi: 10.1017/thg.2013.30. Epub 2013 Jun 3.

PMID:
23725790
15.

Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation.

Kerkel K, Spadola A, Yuan E, Kosek J, Jiang L, Hod E, Li K, Murty VV, Schupf N, Vilain E, Morris M, Haghighi F, Tycko B.

Nat Genet. 2008 Jul;40(7):904-8. doi: 10.1038/ng.174. Epub 2008 Jun 22.

PMID:
18568024
16.

Allele-specific DNA methylation: beyond imprinting.

Tycko B.

Hum Mol Genet. 2010 Oct 15;19(R2):R210-20. doi: 10.1093/hmg/ddq376. Epub 2010 Sep 20. Review.

17.

High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta.

Daelemans C, Ritchie ME, Smits G, Abu-Amero S, Sudbery IM, Forrest MS, Campino S, Clark TG, Stanier P, Kwiatkowski D, Deloukas P, Dermitzakis ET, Tavaré S, Moore GE, Dunham I.

BMC Genet. 2010 Apr 19;11:25. doi: 10.1186/1471-2156-11-25.

18.

Characterization of genome-methylome interactions in 22 nuclear pedigrees.

Plongthongkum N, van Eijk KR, de Jong S, Wang T, Sul JH, Boks MP, Kahn RS, Fung HL, Ophoff RA, Zhang K.

PLoS One. 2014 Jul 14;9(7):e99313. doi: 10.1371/journal.pone.0099313. eCollection 2014.

19.

Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome.

Xie W, Barr CL, Kim A, Yue F, Lee AY, Eubanks J, Dempster EL, Ren B.

Cell. 2012 Feb 17;148(4):816-31. doi: 10.1016/j.cell.2011.12.035.

20.

Genomic landscape of human allele-specific DNA methylation.

Fang F, Hodges E, Molaro A, Dean M, Hannon GJ, Smith AD.

Proc Natl Acad Sci U S A. 2012 May 8;109(19):7332-7. doi: 10.1073/pnas.1201310109. Epub 2012 Apr 20.

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