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Items: 1 to 20 of 165

1.

Genome sequence of the palaeopolyploid soybean.

Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA.

Nature. 2010 Jan 14;463(7278):178-83. doi: 10.1038/nature08670. Erratum in: Nature. 2010 May 6;465(7294):120.

PMID:
20075913
2.

Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing.

Schlueter JA, Lin JY, Schlueter SD, Vasylenko-Sanders IF, Deshpande S, Yi J, O'Bleness M, Roe BA, Nelson RT, Scheffler BE, Jackson SA, Shoemaker RC.

BMC Genomics. 2007 Sep 19;8:330.

3.

Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis.

Patil G, Valliyodan B, Deshmukh R, Prince S, Nicander B, Zhao M, Sonah H, Song L, Lin L, Chaudhary J, Liu Y, Joshi T, Xu D, Nguyen HT.

BMC Genomics. 2015 Jul 11;16:520. doi: 10.1186/s12864-015-1730-y.

4.

Dynamic rearrangements determine genome organization and useful traits in soybean.

Kim KD, Shin JH, Van K, Kim DH, Lee SH.

Plant Physiol. 2009 Nov;151(3):1066-76. doi: 10.1104/pp.109.141739. Epub 2009 Aug 14.

5.

Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication.

Mun JH, Kwon SJ, Yang TJ, Seol YJ, Jin M, Kim JA, Lim MH, Kim JS, Baek S, Choi BS, Yu HJ, Kim DS, Kim N, Lim KB, Lee SI, Hahn JH, Lim YP, Bancroft I, Park BS.

Genome Biol. 2009;10(10):R111. doi: 10.1186/gb-2009-10-10-r111. Epub 2009 Oct 12.

6.

The lipoxygenase gene family: a genomic fossil of shared polyploidy between Glycine max and Medicago truncatula.

Shin JH, Van K, Kim DH, Kim KD, Jang YE, Choi BS, Kim MY, Lee SH.

BMC Plant Biol. 2008 Dec 23;8:133. doi: 10.1186/1471-2229-8-133.

7.

Genome-wide analysis of the MYB transcription factor superfamily in soybean.

Du H, Yang SS, Liang Z, Feng BR, Liu L, Huang YB, Tang YX.

BMC Plant Biol. 2012 Jul 9;12:106. doi: 10.1186/1471-2229-12-106.

8.

Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean.

Innes RW, Ameline-Torregrosa C, Ashfield T, Cannon E, Cannon SB, Chacko B, Chen NW, Couloux A, Dalwani A, Denny R, Deshpande S, Egan AN, Glover N, Hans CS, Howell S, Ilut D, Jackson S, Lai H, Mammadov J, Del Campo SM, Metcalf M, Nguyen A, O'Bleness M, Pfeil BE, Podicheti R, Ratnaparkhe MB, Samain S, Sanders I, Ségurens B, Sévignac M, Sherman-Broyles S, Thareau V, Tucker DM, Walling J, Wawrzynski A, Yi J, Doyle JJ, Geffroy V, Roe BA, Maroof MA, Young ND.

Plant Physiol. 2008 Dec;148(4):1740-59. doi: 10.1104/pp.108.127902. Epub 2008 Oct 8.

9.

The IQD gene family in soybean: structure, phylogeny, evolution and expression.

Feng L, Chen Z, Ma H, Chen X, Li Y, Wang Y, Xiang Y.

PLoS One. 2014 Oct 24;9(10):e110896. doi: 10.1371/journal.pone.0110896. eCollection 2014 Oct 24. Erratum in: PLoS One. 2015;10(3):e0119318.

10.

A Comparative Epigenomic Analysis of Polyploidy-Derived Genes in Soybean and Common Bean.

Kim KD, El Baidouri M, Abernathy B, Iwata-Otsubo A, Chavarro C, Gonzales M, Libault M, Grimwood J, Jackson SA.

Plant Physiol. 2015 Aug;168(4):1433-47. doi: 10.1104/pp.15.00408. Epub 2015 Jul 6.

11.

Genome-wide analysis of the Dof transcription factor gene family reveals soybean-specific duplicable and functional characteristics.

Guo Y, Qiu LJ.

PLoS One. 2013 Sep 30;8(9):e76809. doi: 10.1371/journal.pone.0076809. eCollection 2013 Sep 30. Retraction in: PLoS One. 2016 Nov 17;11(11):e0167019.

12.

Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana.

Mudge J, Cannon SB, Kalo P, Oldroyd GE, Roe BA, Town CD, Young ND.

BMC Plant Biol. 2005 Aug 15;5:15.

13.

Changes in twelve homoeologous genomic regions in soybean following three rounds of polyploidy.

Severin AJ, Cannon SB, Graham MM, Grant D, Shoemaker RC.

Plant Cell. 2011 Sep;23(9):3129-36. doi: 10.1105/tpc.111.089573. Epub 2011 Sep 13.

14.

Comparative evolution of photosynthetic genes in response to polyploid and nonpolyploid duplication.

Coate JE, Schlueter JA, Whaley AM, Doyle JJ.

Plant Physiol. 2011 Apr;155(4):2081-95. doi: 10.1104/pp.110.169599. Epub 2011 Feb 2.

15.

Chromosome-level homeology in paleopolyploid soybean (Glycine max) revealed through integration of genetic and chromosome maps.

Walling JG, Shoemaker R, Young N, Mudge J, Jackson S.

Genetics. 2006 Mar;172(3):1893-900. Epub 2005 Dec 15.

16.

The phytochrome gene family in soybean and a dominant negative effect of a soybean PHYA transgene on endogenous Arabidopsis PHYA.

Wu FQ, Fan CM, Zhang XM, Fu YF.

Plant Cell Rep. 2013 Dec;32(12):1879-90. doi: 10.1007/s00299-013-1500-8. Epub 2013 Sep 8.

PMID:
24013793
17.

Inactivation of duplicated nod factor receptor 5 (NFR5) genes in recessive loss-of-function non-nodulation mutants of allotetraploid soybean (Glycine max L. Merr.).

Indrasumunar A, Kereszt A, Searle I, Miyagi M, Li D, Nguyen CD, Men A, Carroll BJ, Gresshoff PM.

Plant Cell Physiol. 2010 Feb;51(2):201-14. doi: 10.1093/pcp/pcp178. Epub 2009 Dec 9.

PMID:
20007291
18.

Genome-wide SNP identification and characterization in two soybean cultivars with contrasting Mungbean Yellow Mosaic India Virus disease resistance traits.

Yadav CB, Bhareti P, Muthamilarasan M, Mukherjee M, Khan Y, Rathi P, Prasad M.

PLoS One. 2015 Apr 13;10(4):e0123897. doi: 10.1371/journal.pone.0123897. eCollection 2015 Apr 13.

19.

Genome-wide survey and expression analysis of the MADS-box gene family in soybean.

Shu Y, Yu D, Wang D, Guo D, Guo C.

Mol Biol Rep. 2013 Jun;40(6):3901-11. doi: 10.1007/s11033-012-2438-6. Epub 2013 Apr 5.

PMID:
23559340
20.

Pinpointing genes underlying the quantitative trait loci for root-knot nematode resistance in palaeopolyploid soybean by whole genome resequencing.

Xu X, Zeng L, Tao Y, Vuong T, Wan J, Boerma R, Noe J, Li Z, Finnerty S, Pathan SM, Shannon JG, Nguyen HT.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13469-74. doi: 10.1073/pnas.1222368110. Epub 2013 Jul 29.

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