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Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome.

Amid C, Rehaume LM, Brown KL, Gilbert JG, Dougan G, Hancock RE, Harrow JL.

BMC Genomics. 2009 Dec 15;10:606. doi: 10.1186/1471-2164-10-606.


A genome-wide screen identifies a single beta-defensin gene cluster in the chicken: implications for the origin and evolution of mammalian defensins.

Xiao Y, Hughes AL, Ando J, Matsuda Y, Cheng JF, Skinner-Noble D, Zhang G.

BMC Genomics. 2004 Aug 13;5(1):56.


Rapid evolution and diversification of mammalian alpha-defensins as revealed by comparative analysis of rodent and primate genes.

Patil A, Hughes AL, Zhang G.

Physiol Genomics. 2004 Dec 15;20(1):1-11. Epub 2004 Oct 19.


Polymorphic segmental duplications at 8p23.1 challenge the determination of individual defensin gene repertoires and the assembly of a contiguous human reference sequence.

Taudien S, Galgoczy P, Huse K, Reichwald K, Schilhabel M, Szafranski K, Shimizu A, Asakawa S, Frankish A, Loncarevic IF, Shimizu N, Siddiqui R, Platzer M.

BMC Genomics. 2004 Dec 10;5(1):92.


Comparative genomic identification and validation of β-defensin genes in the Ovis aries genome.

Hall TJ, McQuillan C, Finlay EK, O'Farrelly C, Fair S, Meade KG.

BMC Genomics. 2017 Apr 4;18(1):278. doi: 10.1186/s12864-017-3666-x.


Comprehensive comparative homeobox gene annotation in human and mouse.

Wilming LG, Boychenko V, Harrow JL.

Database (Oxford). 2015 Sep 27;2015. pii: bav091. doi: 10.1093/database/bav091. Print 2015.


Sequence analysis of a 212 kb defensin gene cluster on ECA 27q17.

Looft C, Paul S, Philipp U, Regenhard P, Kuiper H, Distl O, Chowdhary BP, Leeb T.

Gene. 2006 Jul 19;376(2):192-8. Epub 2006 Apr 5.


Strain-specific polymorphisms in Paneth cell α-defensins of C57BL/6 mice and evidence of vestigial myeloid α-defensin pseudogenes.

Shanahan MT, Tanabe H, Ouellette AJ.

Infect Immun. 2011 Jan;79(1):459-73. doi: 10.1128/IAI.00996-10. Epub 2010 Nov 1.


Comparative genomics and evolution of the alpha-defensin multigene family in primates.

Das S, Nikolaidis N, Goto H, McCallister C, Li J, Hirano M, Cooper MD.

Mol Biol Evol. 2010 Oct;27(10):2333-43. doi: 10.1093/molbev/msq118. Epub 2010 May 9.


Cross-species analysis of the mammalian beta-defensin gene family: presence of syntenic gene clusters and preferential expression in the male reproductive tract.

Patil AA, Cai Y, Sang Y, Blecha F, Zhang G.

Physiol Genomics. 2005 Sep 21;23(1):5-17. Epub 2005 Jul 20.


A novel murine beta -defensin expressed in tongue, esophagus, and trachea.

Jia HP, Wowk SA, Schutte BC, Lee SK, Vivado A, Tack BF, Bevins CL, McCray PB Jr.

J Biol Chem. 2000 Oct 27;275(43):33314-20.


Discovery of new human beta-defensins using a genomics-based approach.

Jia HP, Schutte BC, Schudy A, Linzmeier R, Guthmiller JM, Johnson GK, Tack BF, Mitros JP, Rosenthal A, Ganz T, McCray PB Jr.

Gene. 2001 Jan 24;263(1-2):211-8.


Creating reference gene annotation for the mouse C57BL6/J genome assembly.

Mudge JM, Harrow J.

Mamm Genome. 2015 Oct;26(9-10):366-78. doi: 10.1007/s00335-015-9583-x. Epub 2015 Jul 18.


The first report of a Pelecaniformes defensin cluster: characterization of β-defensin genes in the crested ibis based on BAC libraries.

Lan H, Chen H, Chen LC, Wang BB, Sun L, Ma MY, Fang SG, Wan QH.

Sci Rep. 2014 Nov 5;4:6923. doi: 10.1038/srep06923.


Genome-level identification, gene expression, and comparative analysis of porcine ß-defensin genes.

Choi MK, Le MT, Nguyen DT, Choi H, Kim W, Kim JH, Chun J, Hyeon J, Seo K, Park C.

BMC Genet. 2012 Nov 15;13:98. doi: 10.1186/1471-2156-13-98.


Comparison of RefSeq protein-coding regions in human and vertebrate genomes.

Fong JH, Murphy TD, Pruitt KD.

BMC Genomics. 2013 Sep 25;14:654. doi: 10.1186/1471-2164-14-654.


A unified gene catalog for the laboratory mouse reference genome.

Zhu Y, Richardson JE, Hale P, Baldarelli RM, Reed DJ, Recla JM, Sinclair R, Reddy TB, Bult CJ.

Mamm Genome. 2015 Aug;26(7-8):295-304. doi: 10.1007/s00335-015-9571-1. Epub 2015 Jun 18.

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