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Items: 1 to 20 of 72

1.

Common introns within orthologous genes: software and application to plants.

Wilkerson MD, Ru Y, Brendel VP.

Brief Bioinform. 2009 Nov;10(6):631-44. doi: 10.1093/bib/bbp051.

PMID:
19933210
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3.

PIP: a database of potential intron polymorphism markers.

Yang L, Jin G, Zhao X, Zheng Y, Xu Z, Wu W.

Bioinformatics. 2007 Aug 15;23(16):2174-7.

PMID:
17545179
4.

Analysis of evolution of exon-intron structure of eukaryotic genes.

Rogozin IB, Sverdlov AV, Babenko VN, Koonin EV.

Brief Bioinform. 2005 Jun;6(2):118-34. Review.

PMID:
15975222
5.

Advances in the Exon-Intron Database (EID).

Shepelev V, Fedorov A.

Brief Bioinform. 2006 Jun;7(2):178-85. Review.

PMID:
16772261
6.

Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species.

Keller O, Odronitz F, Stanke M, Kollmar M, Waack S.

BMC Bioinformatics. 2008 Jun 13;9:278. doi: 10.1186/1471-2105-9-278.

7.

U12DB: a database of orthologous U12-type spliceosomal introns.

Alioto TS.

Nucleic Acids Res. 2007 Jan;35(Database issue):D110-5.

8.

Patterns of intron gain and conservation in eukaryotic genes.

Carmel L, Rogozin IB, Wolf YI, Koonin EV.

BMC Evol Biol. 2007 Oct 12;7:192.

9.

Computer identification of snoRNA genes using a Mammalian Orthologous Intron Database.

Fedorov A, Stombaugh J, Harr MW, Yu S, Nasalean L, Shepelev V.

Nucleic Acids Res. 2005 Aug 10;33(14):4578-83.

10.
11.

Gene structure prediction using an orthologous gene of known exon-intron structure.

Seneff S, Wang C, Burge CB.

Appl Bioinformatics. 2004;3(2-3):81-90.

PMID:
15693733
12.
13.

Whole-genome microarray in Arabidopsis facilitates global analysis of retained introns.

Ner-Gaon H, Fluhr R.

DNA Res. 2006 Jun 30;13(3):111-21.

PMID:
16980712
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16.

SVC: structured visualization of evolutionary sequence conservation.

Roepcke S, Fiziev P, Seeburg PH, Vingron M.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W271-3.

17.

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.

18.

Malin: maximum likelihood analysis of intron evolution in eukaryotes.

Csurös M.

Bioinformatics. 2008 Jul 1;24(13):1538-9. doi: 10.1093/bioinformatics/btn226.

19.

Computational approaches and software tools for genetic linkage map estimation in plants.

Cheema J, Dicks J.

Brief Bioinform. 2009 Nov;10(6):595-608. doi: 10.1093/bib/bbp045. Review.

PMID:
19933208
20.

Intron sequences provide a tool for high-resolution phylogenetic analysis of volvocine algae.

Liss M, Kirk DL, Beyser K, Fabry S.

Curr Genet. 1997 Mar;31(3):214-27. Erratum in: Curr Genet 1997 May;31(5):455.

PMID:
9065384
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