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Items: 1 to 20 of 150

1.

One-pot shotgun quantitative mass spectrometry characterization of histones.

Plazas-Mayorca MD, Zee BM, Young NL, Fingerman IM, LeRoy G, Briggs SD, Garcia BA.

J Proteome Res. 2009 Nov;8(11):5367-74. doi: 10.1021/pr900777e.

2.

Middle-down hybrid chromatography/tandem mass spectrometry workflow for characterization of combinatorial post-translational modifications in histones.

Sidoli S, Schwämmle V, Ruminowicz C, Hansen TA, Wu X, Helin K, Jensen ON.

Proteomics. 2014 Oct;14(19):2200-11. doi: 10.1002/pmic.201400084. Epub 2014 Aug 28.

PMID:
25073878
3.

Identification and Quantification of Histone PTMs Using High-Resolution Mass Spectrometry.

Karch KR, Sidoli S, Garcia BA.

Methods Enzymol. 2016;574:3-29. doi: 10.1016/bs.mie.2015.12.007. Epub 2016 Feb 1.

4.

Enhanced top-down characterization of histone post-translational modifications.

Tian Z, Tolić N, Zhao R, Moore RJ, Hengel SM, Robinson EW, Stenoien DL, Wu S, Smith RD, Paša-Tolić L.

Genome Biol. 2012 Oct 3;13(10):R86. doi: 10.1186/gb-2012-13-10-r86.

5.

Sequential Window Acquisition of all Theoretical Mass Spectra (SWATH) Analysis for Characterization and Quantification of Histone Post-translational Modifications.

Sidoli S, Lin S, Xiong L, Bhanu NV, Karch KR, Johansen E, Hunter C, Mollah S, Garcia BA.

Mol Cell Proteomics. 2015 Sep;14(9):2420-8. doi: 10.1074/mcp.O114.046102. Epub 2015 Jan 30.

6.

Top-down and Middle-down Protein Analysis Reveals that Intact and Clipped Human Histones Differ in Post-translational Modification Patterns.

Tvardovskiy A, Wrzesinski K, Sidoli S, Fey SJ, Rogowska-Wrzesinska A, Jensen ON.

Mol Cell Proteomics. 2015 Dec;14(12):3142-53. doi: 10.1074/mcp.M115.048975. Epub 2015 Sep 30.

7.

Global histone analysis by mass spectrometry reveals a high content of acetylated lysine residues in the malaria parasite Plasmodium falciparum.

Trelle MB, Salcedo-Amaya AM, Cohen AM, Stunnenberg HG, Jensen ON.

J Proteome Res. 2009 Jul;8(7):3439-50. doi: 10.1021/pr9000898.

PMID:
19351122
8.

Quantification of SAHA-Dependent Changes in Histone Modifications Using Data-Independent Acquisition Mass Spectrometry.

Krautkramer KA, Reiter L, Denu JM, Dowell JA.

J Proteome Res. 2015 Aug 7;14(8):3252-62. doi: 10.1021/acs.jproteome.5b00245. Epub 2015 Jul 13.

9.

Liquid chromatography mass spectrometry profiling of histones.

Su X, Jacob NK, Amunugama R, Lucas DM, Knapp AR, Ren C, Davis ME, Marcucci G, Parthun MR, Byrd JC, Fishel R, Freitas MA.

J Chromatogr B Analyt Technol Biomed Life Sci. 2007 May 1;850(1-2):440-54. Epub 2007 Jan 7.

10.

In-gel NHS-propionate derivatization for histone post-translational modifications analysis in Arabidopsis thaliana.

Chen J, Gao J, Peng M, Wang Y, Yu Y, Yang P, Jin H.

Anal Chim Acta. 2015 Jul 30;886:107-13. doi: 10.1016/j.aca.2015.06.019. Epub 2015 Jul 13.

PMID:
26320642
11.

Drawbacks in the use of unconventional hydrophobic anhydrides for histone derivatization in bottom-up proteomics PTM analysis.

Sidoli S, Yuan ZF, Lin S, Karch K, Wang X, Bhanu N, Arnaudo AM, Britton LM, Cao XJ, Gonzales-Cope M, Han Y, Liu S, Molden RC, Wein S, Afjehi-Sadat L, Garcia BA.

Proteomics. 2015 May;15(9):1459-69. doi: 10.1002/pmic.201400483.

12.

Ultra-high performance liquid chromatography-mass spectrometry for the fast profiling of histone post-translational modifications.

Contrepois K, Ezan E, Mann C, Fenaille F.

J Proteome Res. 2010 Oct 1;9(10):5501-9. doi: 10.1021/pr100497a.

PMID:
20707390
13.

Characterization of histone-related chemical modifications in formalin-fixed paraffin-embedded and fresh-frozen human pancreatic cancer xenografts using LC-MS/MS.

Bauden M, Kristl T, Andersson R, Marko-Varga G, Ansari D.

Lab Invest. 2017 Mar;97(3):279-288. doi: 10.1038/labinvest.2016.134. Epub 2016 Dec 12.

PMID:
27941757
14.

Comprehensive mapping of post-translational modifications on synaptic, nuclear, and histone proteins in the adult mouse brain.

Tweedie-Cullen RY, Reck JM, Mansuy IM.

J Proteome Res. 2009 Nov;8(11):4966-82. doi: 10.1021/pr9003739.

PMID:
19737024
15.

Examining histone posttranslational modification patterns by high-resolution mass spectrometry.

Lin S, Garcia BA.

Methods Enzymol. 2012;512:3-28. doi: 10.1016/B978-0-12-391940-3.00001-9.

16.

Quantitative mass spectrometry of histones H3.2 and H3.3 in Suz12-deficient mouse embryonic stem cells reveals distinct, dynamic post-translational modifications at Lys-27 and Lys-36.

Jung HR, Pasini D, Helin K, Jensen ON.

Mol Cell Proteomics. 2010 May;9(5):838-50. doi: 10.1074/mcp.M900489-MCP200. Epub 2010 Feb 11.

17.

Comparative analysis of histone H3 and H4 post-translational modifications of esophageal squamous cell carcinoma with different invasive capabilities.

Zhang K, Li L, Zhu M, Wang G, Xie J, Zhao Y, Fan E, Xu L, Li E.

J Proteomics. 2015 Jan 1;112:180-9. doi: 10.1016/j.jprot.2014.09.004. Epub 2014 Sep 16.

PMID:
25234497
18.

Retrieving Quantitative Information of Histone PTMs by Mass Spectrometry.

Zhang C, Liu Y.

Methods Enzymol. 2017;586:165-191. doi: 10.1016/bs.mie.2016.10.017. Epub 2016 Dec 7.

PMID:
28137562
19.

Data-dependent middle-down nano-liquid chromatography-electron capture dissociation-tandem mass spectrometry: an application for the analysis of unfractionated histones.

Kalli A, Sweredoski MJ, Hess S.

Anal Chem. 2013 Apr 2;85(7):3501-7. doi: 10.1021/ac303103b. Epub 2013 Mar 12.

PMID:
23448339
20.

A novel approach for untargeted post-translational modification identification using integer linear optimization and tandem mass spectrometry.

Baliban RC, DiMaggio PA, Plazas-Mayorca MD, Young NL, Garcia BA, Floudas CA.

Mol Cell Proteomics. 2010 May;9(5):764-79. doi: 10.1074/mcp.M900487-MCP200. Epub 2010 Jan 26.

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