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Items: 1 to 20 of 277

1.

Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function.

Costello JC, Dalkilic MM, Beason SM, Gehlhausen JR, Patwardhan R, Middha S, Eads BD, Andrews JR.

Genome Biol. 2009;10(9):R97. doi: 10.1186/gb-2009-10-9-r97. Epub 2009 Sep 16.

2.

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.

Marbach D, Roy S, Ay F, Meyer PE, Candeias R, Kahveci T, Bristow CA, Kellis M.

Genome Res. 2012 Jul;22(7):1334-49. doi: 10.1101/gr.127191.111. Epub 2012 Mar 28.

3.

Prediction of gene expression in embryonic structures of Drosophila melanogaster.

Samsonova AA, Niranjan M, Russell S, Brazma A.

PLoS Comput Biol. 2007 Jul;3(7):e144.

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5.

An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome.

Hild M, Beckmann B, Haas SA, Koch B, Solovyev V, Busold C, Fellenberg K, Boutros M, Vingron M, Sauer F, Hoheisel JD, Paro R.

Genome Biol. 2003;5(1):R3. Epub 2003 Dec 22.

6.

Computational algorithms to predict Gene Ontology annotations.

Pinoli P, Chicco D, Masseroli M.

BMC Bioinformatics. 2015;16 Suppl 6:S4. doi: 10.1186/1471-2105-16-S6-S4. Epub 2015 Apr 17.

7.

Integration of molecular network data reconstructs Gene Ontology.

Gligorijević V, Janjić V, Pržulj N.

Bioinformatics. 2014 Sep 1;30(17):i594-600. doi: 10.1093/bioinformatics/btu470.

8.

Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy.

Kim WK, Krumpelman C, Marcotte EM.

Genome Biol. 2008;9 Suppl 1:S5. doi: 10.1186/gb-2008-9-s1-s5. Epub 2008 Jun 27.

9.
10.

DEFOG: discrete enrichment of functionally organized genes.

Wittkop T, Berman AE, Fleisch KM, Mooney SD.

Integr Biol (Camb). 2012 Jul;4(7):795-804. doi: 10.1039/c2ib00136e. Epub 2012 Jun 18.

11.

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203. doi: 10.1186/1471-2105-9-203.

12.

Lists2Networks: integrated analysis of gene/protein lists.

Lachmann A, Ma'ayan A.

BMC Bioinformatics. 2010 Feb 12;11:87. doi: 10.1186/1471-2105-11-87.

13.

Functional-network-based gene set analysis using gene-ontology.

Chang B, Kustra R, Tian W.

PLoS One. 2013;8(2):e55635. doi: 10.1371/journal.pone.0055635. Epub 2013 Feb 13.

14.

Modular biological function is most effectively captured by combining molecular interaction data types.

Ames RM, Macpherson JI, Pinney JW, Lovell SC, Robertson DL.

PLoS One. 2013 May 3;8(5):e62670. doi: 10.1371/journal.pone.0062670. Print 2013.

16.

DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions.

Yu J, Pacifico S, Liu G, Finley RL Jr.

BMC Genomics. 2008 Oct 7;9:461. doi: 10.1186/1471-2164-9-461.

17.

Annotation of gene function in citrus using gene expression information and co-expression networks.

Wong DC, Sweetman C, Ford CM.

BMC Plant Biol. 2014 Jul 15;14:186. doi: 10.1186/1471-2229-14-186.

19.

An effective method for network module extraction from microarray data.

Mahanta P, Ahmed HA, Bhattacharyya DK, Kalita JK.

BMC Bioinformatics. 2012;13 Suppl 13:S4. doi: 10.1186/1471-2105-13-S13-S4. Epub 2012 Aug 24.

20.

Integrating computational biology and forward genetics in Drosophila.

Aerts S, Vilain S, Hu S, Tranchevent LC, Barriot R, Yan J, Moreau Y, Hassan BA, Quan XJ.

PLoS Genet. 2009 Jan;5(1):e1000351. doi: 10.1371/journal.pgen.1000351. Epub 2009 Jan 23.

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