Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 125

2.

Computational analysis of splicing errors and mutations in human transcripts.

Kurmangaliyev YZ, Gelfand MS.

BMC Genomics. 2008 Jan 14;9:13. doi: 10.1186/1471-2164-9-13.

3.

Identification of alternative 5'/3' splice sites based on the mechanism of splice site competition.

Xia H, Bi J, Li Y.

Nucleic Acids Res. 2006;34(21):6305-13. Epub 2006 Nov 10.

4.

Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.

Bai Y, Kinne J, Donham B, Jiang F, Ding L, Hassler JR, Kaufman RJ.

BMC Genomics. 2016 Aug 22;17 Suppl 7:503. doi: 10.1186/s12864-016-2896-7.

6.

Molecular characterisation of SALMFamide neuropeptides in sea urchins.

Elphick MR, Thorndyke MC.

J Exp Biol. 2005 Nov;208(Pt 22):4273-82.

7.

A genome-wide analysis of biomineralization-related proteins in the sea urchin Strongylocentrotus purpuratus.

Livingston BT, Killian CE, Wilt F, Cameron A, Landrum MJ, Ermolaeva O, Sapojnikov V, Maglott DR, Buchanan AM, Ettensohn CA.

Dev Biol. 2006 Dec 1;300(1):335-48. Epub 2006 Aug 15.

8.

Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome.

Zavolan M, Kondo S, Schonbach C, Adachi J, Hume DA, Hayashizaki Y, Gaasterland T; RIKEN GER Group; GSL Members.

Genome Res. 2003 Jun;13(6B):1290-300.

9.

Impact of RNA structure on the prediction of donor and acceptor splice sites.

Marashi SA, Eslahchi C, Pezeshk H, Sadeghi M.

BMC Bioinformatics. 2006 Jun 13;7:297.

10.

EuSplice: a unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes.

Bhasi A, Pandey RV, Utharasamy SP, Senapathy P.

Bioinformatics. 2007 Jul 15;23(14):1815-23. Epub 2007 Mar 7.

PMID:
17344236
11.

Cytochrome P450 1 genes in early deuterostomes (tunicates and sea urchins) and vertebrates (chicken and frog): origin and diversification of the CYP1 gene family.

Goldstone JV, Goldstone HM, Morrison AM, Tarrant A, Kern SE, Woodin BR, Stegeman JJ.

Mol Biol Evol. 2007 Dec;24(12):2619-31. Epub 2007 Oct 4.

PMID:
17916789
12.

Computational discovery of human coding and non-coding transcripts with conserved splice sites.

Rose D, Hiller M, Schutt K, Hackermüller J, Backofen R, Stadler PF.

Bioinformatics. 2011 Jul 15;27(14):1894-900. doi: 10.1093/bioinformatics/btr314. Epub 2011 May 26.

PMID:
21622663
13.

LEMONS - A Tool for the Identification of Splice Junctions in Transcriptomes of Organisms Lacking Reference Genomes.

Levin L, Bar-Yaacov D, Bouskila A, Chorev M, Carmel L, Mishmar D.

PLoS One. 2015 Nov 25;10(11):e0143329. doi: 10.1371/journal.pone.0143329. eCollection 2015.

14.

TassDB2 - A comprehensive database of subtle alternative splicing events.

Sinha R, Lenser T, Jahn N, Gausmann U, Friedel S, Szafranski K, Huse K, Rosenstiel P, Hampe J, Schuster S, Hiller M, Backofen R, Platzer M.

BMC Bioinformatics. 2010 Apr 29;11:216. doi: 10.1186/1471-2105-11-216.

15.

Dual-specificity splice sites function alternatively as 5' and 3' splice sites.

Zhang C, Hastings ML, Krainer AR, Zhang MQ.

Proc Natl Acad Sci U S A. 2007 Sep 18;104(38):15028-33. Epub 2007 Sep 11.

16.

Single base-pair substitutions in exon-intron junctions of human genes: nature, distribution, and consequences for mRNA splicing.

Krawczak M, Thomas NS, Hundrieser B, Mort M, Wittig M, Hampe J, Cooper DN.

Hum Mutat. 2007 Feb;28(2):150-8.

PMID:
17001642
17.

Bioinformatics and mutations leading to exon skipping.

Desmet FO, Béroud C.

Methods Mol Biol. 2012;867:17-35. doi: 10.1007/978-1-61779-767-5_2. Review.

PMID:
22454052
18.
19.
20.

Genome-wide survey of allele-specific splicing in humans.

Nembaware V, Lupindo B, Schouest K, Spillane C, Scheffler K, Seoighe C.

BMC Genomics. 2008 Jun 2;9:265. doi: 10.1186/1471-2164-9-265.

Supplemental Content

Support Center