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Items: 1 to 20 of 134

1.

Improvement of RNA secondary structure prediction using RNase H cleavage and randomized oligonucleotides.

Kauffmann AD, Campagna RJ, Bartels CB, Childs-Disney JL.

Nucleic Acids Res. 2009 Oct;37(18):e121. doi: 10.1093/nar/gkp587.

2.

Facilitating RNA structure prediction with microarrays.

Kierzek E, Kierzek R, Turner DH, Catrina IE.

Biochemistry. 2006 Jan 17;45(2):581-93.

3.

The use of oligonucleotide probes containing 2'-deoxy-2'-fluoronucleosides for regiospecific cleavage of RNA by RNase H from Escherichia coli.

Schmidt S, Niemann A, Krynetskaya NF, Oretskaya TS, Metelev VG, Suchomlinov VV, Shabarova ZA, Cech D.

Biochim Biophys Acta. 1992 Feb 28;1130(1):41-6.

PMID:
1371935
4.
5.

Principles for understanding the accuracy of SHAPE-directed RNA structure modeling.

Leonard CW, Hajdin CE, Karabiber F, Mathews DH, Favorov OV, Dokholyan NV, Weeks KM.

Biochemistry. 2013 Jan 29;52(4):588-95. doi: 10.1021/bi300755u.

7.

RNase YI* and RNA structure studies.

Cannistraro VJ, Kennell D.

Nucleic Acids Res. 1997 Apr 1;25(7):1405-12.

8.

Structural changes of tRNA and 5S rRNA induced with magnesium and visualized with synchrotron mediated hydroxyl radical cleavage.

Barciszewska MZ, Rapp G, Betzel C, Erdmann VA, Barciszewski J.

Mol Biol Rep. 2001;28(2):103-10.

PMID:
11931387
9.

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure.

Mathews DH, Sabina J, Zuker M, Turner DH.

J Mol Biol. 1999 May 21;288(5):911-40.

PMID:
10329189
10.
11.

RNA secondary structure prediction based on free energy and phylogenetic analysis.

Juan V, Wilson C.

J Mol Biol. 1999 Jun 18;289(4):935-47.

PMID:
10369773
12.

Secondary structure prediction and structure-specific sequence analysis of single-stranded DNA.

Dong F, Allawi HT, Anderson T, Neri BP, Lyamichev VI.

Nucleic Acids Res. 2001 Aug 1;29(15):3248-57.

13.

Secondary structure prediction of interacting RNA molecules.

Andronescu M, Zhang ZC, Condon A.

J Mol Biol. 2005 Feb 4;345(5):987-1001.

PMID:
15644199
14.
16.
18.

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure.

Mathews DH, Disney MD, Childs JL, Schroeder SJ, Zuker M, Turner DH.

Proc Natl Acad Sci U S A. 2004 May 11;101(19):7287-92.

19.

Integrating chemical footprinting data into RNA secondary structure prediction.

Zarringhalam K, Meyer MM, Dotu I, Chuang JH, Clote P.

PLoS One. 2012;7(10):e45160. doi: 10.1371/journal.pone.0045160.

20.

Unfolding of the tertiary structure of specific tRNA and ribosomal 5S RNA from plants as studied with hydroxyl radicals.

Barciszewska MZ, Barciszewski J, Erdmann VA.

Int J Biol Macromol. 1992 Feb;14(1):41-4.

PMID:
1317717
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